PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00020.1.g03520.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 262aa MW: 28297.3 Da PI: 8.0652 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.3 | 3.1e-16 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r tf kRr+ ++KK +EL +LCd++++v+++++ Zjn_sc00020.1.g03520.1.sm.mk 11 IANDSARRATFNKRRASLMKKTSELATLCDVDACVLVYGT 50 89************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.423 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.6E-20 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.55E-23 | 1 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.46E-29 | 2 | 86 | No hit | No description |
PRINTS | PR00404 | 1.0E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-16 | 11 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 262 aa Download sequence Send to blast |
MARKKVKLQL IANDSARRAT FNKRRASLMK KTSELATLCD VDACVLVYGT GSSQPEVWPP 60 SATEAARILS RFKAMPEVDQ CKRMMDMEDF LRQRNAKLKE QLEKASKENH KRETALLLHN 120 AITGRGPGVA ALSRDELISL ESTVNTRLKE VMNAIQRLKE QGHGDPATAL QLSMASQSQV 180 PPAVPYPAGS DFSEAVPAPD LESWLLDLTK DEGFGGDSGS FGGGVAGAST SGGLGDMLQL 240 GNIMARLPEA DQKPSFAFPP PM |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008647071.1 | 4e-78 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1E5ULN7 | 2e-81 | A0A1E5ULN7_9POAL; Agamous-like MADS-box protein AGL80 | ||||
STRING | GRMZM5G839969_P01 | 2e-77 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G05860.2 | 3e-30 | M-type_MADS family protein |