PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00018.1.g02760.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 735aa MW: 79373.3 Da PI: 9.9854

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00018.1.g02760.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.9	2.8e-06	380	408	3	31
HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 3 rahnerErrRRdriNsafeeLrellPkas 31 +h+ +Er RR++i +++ L++l+P +s Zjn_sc00018.1.g02760.1.am.mk 380 NSHSLAERLRREKISERMKLLQDLVPGCS 408 58************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.4E-7	375	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.16E-4	375	409	No hit	No description
PROSITE profile	PS50888	10.48	377	426	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.2E-7	380	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence Send to blast
MTARSSTGEC NAPRPAGVAV HKTGQRGSGN KTWMAKEARR AHPYWATIFS SSLGTRKLLG 60 VARNLSRLVI YVACGPLSGM PVNHCLRVNS FFTFPCFFNF TFALWLLGFP ALLHRATSAL 120 LREVQPRSTD MNNESSEKGM ESNRASSGVA GIPVEWQNQF SAAFPCPPAQ QQAPMMDSFA 180 SAGLWASTSQ AMGLSDAMSA ARGTGFLAPV PGFLPQGLGH FPVDSGFIER AARASCFGGG 240 GSGGEMMGSN AGFGAADQPM SNAFGGSSEA LQDRQRKDGN DKAEPELDGH EEVPSSDAAG 300 GDCSSKGKLD SKKRRRSNEV LSSNLPANSA NESVHSKDKG EESSPATTAG KSKGKGAKET 360 SDAQKEEYIH VRARRGQATN SHSLAERLRR EKISERMKLL QDLVPGCSKM AYPSLGSQDL 420 SMRPSQDGFQ IAANRANHRF LCRTVVHFVA ATEADSRRTQ YEACFGIFCR CRQAFQDRQA 480 IDADEASQPP VRGPGRLARS RWVGVSYGDS DAGSDNVLSV PTSGRPEPRP RPNLCNNMTM 540 LACRLPARAS GPACHIPSTC LAPRARCRRS RSPMNVHRRT PVEVVPRTCC HLPRHALYST 600 TAFLSPEELN MNSPAGRPFL SISSVLADRP LPTRTLRVAA TDIPGPSPEP HGMHGRMENW 660 KDKQHSQHGA ATCNWNVARS YRCLRLSETS FSSAPRGMTQ MRRPCGAQGQ RPETTRGHVR 720 SSDSGLPAQQ QLTSG

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence Send to blast

MTARSSTGEC NAPRPAGVAV HKTGQRGSGN KTWMAKEARR AHPYWATIFS SSLGTRKLLG  60
VARNLSRLVI YVACGPLSGM PVNHCLRVNS FFTFPCFFNF TFALWLLGFP ALLHRATSAL  120
LREVQPRSTD MNNESSEKGM ESNRASSGVA GIPVEWQNQF SAAFPCPPAQ QQAPMMDSFA  180
SAGLWASTSQ AMGLSDAMSA ARGTGFLAPV PGFLPQGLGH FPVDSGFIER AARASCFGGG  240
GSGGEMMGSN AGFGAADQPM SNAFGGSSEA LQDRQRKDGN DKAEPELDGH EEVPSSDAAG  300
GDCSSKGKLD SKKRRRSNEV LSSNLPANSA NESVHSKDKG EESSPATTAG KSKGKGAKET  360
SDAQKEEYIH VRARRGQATN SHSLAERLRR EKISERMKLL QDLVPGCSKM AYPSLGSQDL  420
SMRPSQDGFQ IAANRANHRF LCRTVVHFVA ATEADSRRTQ YEACFGIFCR CRQAFQDRQA  480
IDADEASQPP VRGPGRLARS RWVGVSYGDS DAGSDNVLSV PTSGRPEPRP RPNLCNNMTM  540
LACRLPARAS GPACHIPSTC LAPRARCRRS RSPMNVHRRT PVEVVPRTCC HLPRHALYST  600
TAFLSPEELN MNSPAGRPFL SISSVLADRP LPTRTLRVAA TDIPGPSPEP HGMHGRMENW  660
KDKQHSQHGA ATCNWNVARS YRCLRLSETS FSSAPRGMTQ MRRPCGAQGQ RPETTRGHVR  720
SSDSGLPAQQ QLTSG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121418	3e-76	AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence.
GenBank	HQ858863	3e-76	HQ858863.1 Oryza sativa Japonica Group isolate UT1672 bHLH- transcription factor mRNA, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	7e-27	bHLH family protein