 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Zjn_sc00016.1.g07000.1.am.mkhc |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
Family |
MYB |
Protein Properties |
Length: 234aa MW: 27057.6 Da PI: 8.1172 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zjn_sc00016.1.g07000.1.am.mkhc | genome | ZGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ed +lv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl
Zjn_sc00016.1.g07000.1.am.mkhc 10 KGPWTEQEDTQLVCTVRLFGDRRWDFIAQVSGLNRTGKSCRLRWVNYL 57
79********************************************97 PP
|
2 | Myb_DNA-binding | 55.8 | 1e-17 | 64 | 108 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
gr++++E+ l++d+++++G++ W++Iar+++ gRt++++k++w++++
Zjn_sc00016.1.g07000.1.am.mkhc 64 GRMSPQEERLIIDLHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108
89*******************.*********.************986 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 234 aa
Download sequence Send
to blast |
MVTVREDTRK GPWTEQEDTQ LVCTVRLFGD RRWDFIAQVS GLNRTGKSCR LRWVNYLHPG 60 LKHGRMSPQE ERLIIDLHAR WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERNMRMS 120 PSSSSSSLTY QSCFLDATPN AGMISNGARN RSTCITSTLE SIQTAMDGYP MEQIWNEVDA 180 PSMLGIDEPK ENAYGTLPCP LPSAAMLDYK CPEVFWKIED DEIWMSAPQF DYGN
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1gv2_A | 3e-27 | 10 | 112 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-26 | 10 | 112 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-26 | 10 | 112 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-27 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-27 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. {ECO:0000305}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KM387410 | 1e-118 | KM387410.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 1 mRNA, complete cds, alternatively spliced. |