PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 234aa MW: 27057.6 Da PI: 8.1172

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00016.1.g07000.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.9e-17	10	57	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl Zjn_sc00016.1.g07000.1.am.mkhc 10 KGPWTEQEDTQLVCTVRLFGDRRWDFIAQVSGLNRTGKSCRLRWVNYL 57 79********************************************97 PP
2	Myb_DNA-binding	55.8	1e-17	64	108	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr++++E+ l++d+++++G++ W++Iar+++ gRt++++k++w++++ Zjn_sc00016.1.g07000.1.am.mkhc 64 GRMSPQEERLIIDLHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108 89*****************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.851	5	57	IPR017930	Myb domain
SuperFamily	SSF46689	4.49E-29	8	104	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-14	9	59	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-16	10	57	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-19	11	64	IPR009057	Homeodomain-like
CDD	cd00167	7.41E-11	12	57	No hit	No description
PROSITE profile	PS51294	25.826	58	112	IPR017930	Myb domain
SMART	SM00717	2.5E-16	62	110	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-15	64	107	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.6E-24	65	111	IPR009057	Homeodomain-like
CDD	cd00167	4.25E-12	65	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MVTVREDTRK GPWTEQEDTQ LVCTVRLFGD RRWDFIAQVS GLNRTGKSCR LRWVNYLHPG 60 LKHGRMSPQE ERLIIDLHAR WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERNMRMS 120 PSSSSSSLTY QSCFLDATPN AGMISNGARN RSTCITSTLE SIQTAMDGYP MEQIWNEVDA 180 PSMLGIDEPK ENAYGTLPCP LPSAAMLDYK CPEVFWKIED DEIWMSAPQF DYGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	3e-27	10	112	4	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	1e-26	10	112	58	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	1e-26	10	112	58	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	3e-27	10	112	4	105	C-Myb DNA-Binding Domain
1msf_C	3e-27	10	112	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM387410	1e-118	KM387410.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 1 mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980031.1	1e-130	myb-related protein MYBAS1
Swissprot	Q53NK6	1e-119	MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBL	K3ZJP9	1e-129	K3ZJP9_SETIT; Uncharacterized protein
STRING	Si026803m	1e-130	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP636	37	169

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	2e-74	myb domain protein 59

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]