PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00015.1.g05430.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 540aa MW: 56590.1 Da PI: 10.7852 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.9 | 2.6e-42 | 231 | 306 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dl+ k+y+ rhkvC++h+k+p v+v+g+eqrfCqqCsrfh+lsefD++krsCrrrLa+hnerrrk+ Zjn_sc00015.1.g05430.1.am.mk 231 RCQVEGCDVDLTGSKTYYYRHKVCSAHAKTPLVIVAGIEQRFCQQCSRFHQLSEFDQGKRSCRRRLAGHNERRRKP 306 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.1E-33 | 224 | 293 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.915 | 229 | 306 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.93E-40 | 230 | 309 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.0E-33 | 232 | 305 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MACYVALRFL LVPLASVHRP LAQNQKRLRR TQATLQKPRQ RAARHASSNS GGPSSATATA 60 FLPSIASAQP IAMASAKGGG RYKLGQLVCA RSRRVILSAK PPRSCPSASP LPSLSSLPER 120 EKRGAENLLP PLQSSSPRAF PAHRRTVMAT ASAGAGGGSS GGGGDDQLHG LKFGKKIFFE 180 DAGSTSGDGS SSGSGSGSAP PPPASPRATG GGRRGTGAAG GASSSSAQPA RCQVEGCDVD 240 LTGSKTYYYR HKVCSAHAKT PLVIVAGIEQ RFCQQCSRFH QLSEFDQGKR SCRRRLAGHN 300 ERRRKPPPGP LASRYGRFAA SFGEEPSRFR SFMLDFSYPR VPSSMRDGWP AARPGERVPG 360 SIQWQANLDP RHHHSAVAGY GIHPYGSQRS SAPRPSAFPG TEHPPGGGLA GAPADSSCAL 420 SLLSTQPWDT THSGSHDRAA TLSSTGGFGG NPVTPSLIAS NYITPSPWTG PPGHEGGQSV 480 PPQLPPEVPL DEVPSGPSHH GQFSGELELA LQGNRPAPRR MDHGSSSTFN QDGNPTDWSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-30 | 232 | 305 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974838.1 | 1e-168 | squamosa promoter-binding-like protein 14 isoform X1 | ||||
Swissprot | Q7EXZ2 | 1e-132 | SPL14_ORYSJ; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A3Q8AS14 | 1e-172 | A0A3Q8AS14_9POAL; Squamosa-promoter binding protein-like protein | ||||
STRING | Si013870m | 1e-165 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2527 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 1e-44 | squamosa promoter binding protein-like 9 |