PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00014.1.g07150.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 291aa MW: 32761.6 Da PI: 4.6723

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00014.1.g07150.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	76.2	5.5e-24	38	107	2	71
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekk 71 Fl+k+y++++d++++ ++sws ++nsfvv+d++ f + +Lp+yFkh+nf+SFvRQLn+Y + +dee + Zjn_sc00014.1.g07150.1.sm.mkhc 38 FLTKTYDMIDDPTTDAVVSWSCTNNSFVVWDPHIFGTVLLPRYFKHNNFSSFVRQLNTYVGNYGHDEEID 107 9******************888********************************954444444433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.6E-28	34	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	8.1E-26	34	104	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.04E-22	36	96	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.2E-20	38	144	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-14	38	61	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-14	76	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-14	89	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MNHRMVNPVK VESQQSLGAA NGHPSPMDWL HDGGPPPFLT KTYDMIDDPT TDAVVSWSCT 60 NNSFVVWDPH IFGTVLLPRY FKHNNFSSFV RQLNTYVGNY GHDEEIDQLK RDKQLLMAEV 120 VKLRQEQQNT KSSLQAMEEK LQGTEQKQQQ IMAFMARVMQ NPDFMRQLIS QREVTKGLEG 180 VISKKRRRRI DQGPEADSMG TSSSLEQGSQ AIFEPQEPVE LLVYGVPSDL ESSSVETKGA 240 EAQQGVSSSG SELLRSRPSG ELNDEFWEDL LHEGGLGEEA DNRVGQDDMK M

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-17	36	96	27	87	Heat shock factor protein 1
5d5v_B	3e-17	36	96	27	87	Heat shock factor protein 1
5d5v_D	3e-17	36	96	27	87	Heat shock factor protein 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	188	KKRRRR
2	184	189	KRRRRI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269\|PubMed:18064488}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794070.1	1e-167	heat stress transcription factor A-2e-like
Swissprot	Q6F388	1e-144	HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBL	A0A1E5WG11	1e-166	A0A1E5WG11_9POAL; Heat stress transcription factor A-2e
STRING	Pavir.J01161.1.p	1e-170	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP308	37	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	3e-60	heat shock transcription factor A2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]