PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00014.1.g03870.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 371aa    MW: 40940.7 Da    PI: 4.9388
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00014.1.g03870.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.71.8e-33561462101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k++++++d+++++++sw   gnsfvv+d + fa+ +Lp yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+
  Zjn_sc00014.1.g03870.1.am.mk  56 FLTKTFDVVDDPNTDTVVSWGFAGNSFVVWDANAFATVILPCYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFA 127
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkk 101
                                   ++ F +gk++ll++ikr++
  Zjn_sc00014.1.g03870.1.am.mk 128 NEAFLRGKRDLLKTIKRRR 146
                                   *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.81E-3352145IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.5E-5552145IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.8E-3652145IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.2E-185679IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.0E-3056145IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-1894106IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434095119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-18107119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDPFHGIVKE EELDFDYIDF SGGSAEAAPS SSWAAAVGSG LPRPMEGLGE AGPPPFLTKT  60
FDVVDDPNTD TVVSWGFAGN SFVVWDANAF ATVILPCYFK HSNFSSFVRQ LNTYGFRKVD  120
PDRWEFANEA FLRGKRDLLK TIKRRRPPPT SPSAQQGQAQ APAACLEVGQ FGREGEVHRL  180
QRDKGILLAE VVKLRQEQQA TRAQMQAMEE RITVAEQKQQ QMTVFLARAM KNPSFLKMLV  240
DRHDLEGCRK VLEDELSKKR RRPIEYSPRD GETSAGQPSS AAVTVNDYVA RLSVRVPEAA  300
SSDENRREES GAGEDTESFW VELLHLGLEE KHREGGTSGG GAEGSGADVD DDVDVLVQSI  360
YHLNPNPGSP K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-27351451129Heat shock factor protein 1
5d5v_B3e-27351451129Heat shock factor protein 1
5d5v_D3e-27351451129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138144LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795376.11e-177heat stress transcription factor A-2a-like
RefseqXP_025817582.11e-177heat stress transcription factor A-2a-like
SwissprotQ84MN71e-151HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBLA0A2T7C1481e-176A0A2T7C148_9POAL; Uncharacterized protein
STRINGPavir.J00582.1.p1e-178(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-78heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]