PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g07230.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 395aa    MW: 42794.6 Da    PI: 9.4238
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g07230.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30322379359
                                   -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   D y+WrKYGqK++kgs++pr+YYrC+s+ +C+++k+ver+++dp+++++tYe++Hnh 
  Zjn_sc00013.1.g07230.1.am.mk 322 DSYSWRKYGQKPIKGSPHPRGYYRCSSKkDCMARKHVERCRSDPTMLIVTYENDHNHA 379
                                   99*************************99****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.4E-7276318IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.1E-33308381IPR003657WRKY domain
PROSITE profilePS5081130.986315381IPR003657WRKY domain
SuperFamilySSF1182901.01E-26316381IPR003657WRKY domain
SMARTSM007742.1E-36320380IPR003657WRKY domain
PfamPF031065.8E-26322378IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEEVEQANRA AVESCKKVVA VLSRSGNPFQ PVPVAAETDE AVARFGKVTA VLSDRLGHAR  60
ARIGKRIASP VDASYLMDHQ PIATCQTPNS ALLVGTQALP PPPPPPTIRS VSVMSRQETE  120
AAPVPAPAPC ANVTLTPARF DRNMFLETPL LYLNSCSVPS PNATAVQKSS SKAVATPVAN  180
PCTTTTHIQF QPQPQQQPKA QKSFLFDQTP STEQFHIEVP RGGAKEVISF SFDNNSVCTS  240
SAATSFFTSI SNQLISMSDA ATSSAATGKK AYGKRGEDHG VKCHCPKKKF VSFVSPVQWK  300
PRDKRVVRVP AISDKNADIP PDSYSWRKYG QKPIKGSPHP RGYYRCSSKK DCMARKHVER  360
CRSDPTMLIV TYENDHNHAP PLDPSVLAAN AETCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-183183811577Probable WRKY transcription factor 4
2lex_A4e-183183811577Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8352025e-70CT835202.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA207H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678752.11e-155protein WRKY1
TrEMBLK4AMM71e-154K4AMM7_SETIT; Uncharacterized protein
STRINGSi040171m1e-155(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.16e-41WRKY DNA-binding protein 21