PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00012.1.g06570.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 296aa    MW: 33212.2 Da    PI: 10.9685
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00012.1.g06570.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB179.92.3e-56161255195
                           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedy 79 
                                     vreqdrflPian+srimkk++Pan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfe+y
  Zjn_sc00012.1.g06570.1.am.mkhc 161 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEEY 239
                                     69***************************************************************************** PP

                           NF-YB  80 veplkvylkkyreleg 95 
                                     +eplkvyl+kyre+ +
  Zjn_sc00012.1.g06570.1.am.mkhc 240 IEPLKVYLQKYREVLS 255
                                     *************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.9E-53160261IPR009072Histone-fold
SuperFamilySSF471132.64E-39164261IPR009072Histone-fold
PfamPF008085.9E-28167231IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.8E-22195213No hitNo description
PROSITE patternPS006850198214IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.8E-22214232No hitNo description
PRINTSPR006152.8E-22233251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MPKRQDRKER KKKNPEREKE PSTTEHQPPC AGSTVHRALP PAPTRRLPRQ PIYTPRTAWI  60
PPPPHRTRLG RLLFSSVRSP TRRPHRCSAR SLAPPPRPPP SPRPRHLASF LHVARARAYI  120
RVSVGWVVVQ DHRMADGPTS PGGGGGSHES GSPRGGGGGG VREQDRFLPI ANISRIMKKA  180
VPANGKIAKD AKETVQECVS EFISFITSEA SDKCQREKRK TINGDDLLWA MATLGFEEYI  240
EPLKVYLQKY REVLSKRDGV KTVELLTTPF IGLVEDIKKW ASKEHTTKEW VICSLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B5e-47162252494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-47162252494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0090781e-118BT009078.1 Triticum aestivum clone wkm1c.pk0002.d7:fis, full insert mRNA sequence.
GenBankKM0787351e-118KM078735.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-A2) mRNA, complete cds.
GenBankKM0787361e-118KM078736.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-B2) mRNA, complete cds.
GenBankKM0787371e-118KM078737.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D2) mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-59nuclear factor Y, subunit B3