PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00010.1.g01410.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 427aa    MW: 46662.3 Da    PI: 8.3659
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00010.1.g01410.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.92.7e-57231326297
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                   reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv+p
  Zjn_sc00010.1.g01410.1.am.mk 231 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVDP 311
                                   89******************************************************************************* PP

                         NF-YB  83 lkvylkkyrelegek 97 
                                   lk yl+k+re+ege+
  Zjn_sc00010.1.g01410.1.am.mk 312 LKHYLHKFREIEGER 326
                                   *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.2E-54228330IPR009072Histone-fold
SuperFamilySSF471138.69E-40233338IPR009072Histone-fold
PfamPF008082.2E-27236300IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.9E-19264282No hitNo description
PROSITE patternPS006850267283IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.9E-19283301No hitNo description
PRINTSPR006152.9E-19302320No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MNASELARTA QLYPEILYGS PRGVLLFDRR FLEIQVDFLS TSGDVVSDAR MGERLEPTVS  60
LDVGWGRFVC PVLASSSVLV WSKCKSYVAH RQLVHLMAGR RPTCSRTHCN GQDASDVASI  120
HSDVIARWQI LIRKRTVGGT PRSYLDAFLS ARSNGPAIFH HRSHFSSSSY RDWLERFDEI  180
SRSFSALLRL LYRALFLDLR LQRERSEAAM PDSDNDSGGP SNAGGDLSSS REQDRFLPIA  240
NVSRIMKKAL PANAKISKDA KETVQECVSE FISFITGEAS DKCQREKRKT INGDDLLWAM  300
TTLGFEEYVD PLKHYLHKFR EIEGERTAAS SGGGSTAAAQ QQQSDMSRNI NAGGVAYGGY  360
GGPGAGGMMM MMGQPPMYGG SPQQQQQQQQ QQHQLQHHMA TGGGGGYGHL GGGSSSASSG  420
LGGQDRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A9e-44229321193NF-YB
4awl_B1e-43229321294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-43229321294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2311251e-162AC231125.2 Oryza minuta clone OM__Ba0231A01, complete sequence.
GenBankAC2330451e-162AC233045.1 Oryza minuta clone OM__Ba0165A09, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-67nuclear factor Y, subunit B3