PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00008.1.g07840.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 510aa MW: 55279.4 Da PI: 7.3709

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00008.1.g07840.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.7	4.1e-31	110	163	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL ++hvkSHLQ+YR+ Zjn_sc00008.1.g07840.1.am.mk 110 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLNIAHVKSHLQMYRS 163 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.6E-29	106	164	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.49	106	166	IPR017930	Myb domain
SuperFamily	SSF46689	1.11E-13	109	164	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-21	110	165	IPR006447	Myb domain, plants
Pfam	PF00249	8.4E-8	111	162	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MGDVKEKAVV EILEDDEKRS WRNSLPPVVL DLNESFLVEG SEDDDEVEED DDGGSTSEVA 60 GACRSSSNNS STNHNSGSNK NNDISSSSSK AEGSGERVPT VRPYNRSKLP RLRWTPDLHM 120 AFVHAVERLG GQERATPKLV LQMMNVRGLN IAHVKSHLQM YRSKKLDHES GHERTGISSV 180 FSPMDFHMRR GDRRFHDMFL QRAAGSALSS SLLQNVGFFG SRNAVSPEAS RIYGLLHRRQ 240 AATQTFDFKN YSSLRNQELA FNHHAASVTA GAITSDHGPA KGLIHNMIFR KDDKPTSHLF 300 DVRDAIAPNP PAVVTGAADR SSNWVGSSSR PLSRTMSASA STGFALGSHH LLSRWRGAGG 360 GNGYHLNGDA NTTSSDPVVT TDALRARLEK HLEPKAPNKV IDEMCTATGE KRTKILMEEN 420 SCTPDLQVGL SPDNNGAEAE KAKKRKVALS EQALDNDKIP LLSLSLSLRS GEGSGGDAGS 480 RLEADSSSSN RKAALGLSTL DLTMSIKTLE

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MGDVKEKAVV EILEDDEKRS WRNSLPPVVL DLNESFLVEG SEDDDEVEED DDGGSTSEVA  60
GACRSSSNNS STNHNSGSNK NNDISSSSSK AEGSGERVPT VRPYNRSKLP RLRWTPDLHM  120
AFVHAVERLG GQERATPKLV LQMMNVRGLN IAHVKSHLQM YRSKKLDHES GHERTGISSV  180
FSPMDFHMRR GDRRFHDMFL QRAAGSALSS SLLQNVGFFG SRNAVSPEAS RIYGLLHRRQ  240
AATQTFDFKN YSSLRNQELA FNHHAASVTA GAITSDHGPA KGLIHNMIFR KDDKPTSHLF  300
DVRDAIAPNP PAVVTGAADR SSNWVGSSSR PLSRTMSASA STGFALGSHH LLSRWRGAGG  360
GNGYHLNGDA NTTSSDPVVT TDALRARLEK HLEPKAPNKV IDEMCTATGE KRTKILMEEN  420
SCTPDLQVGL SPDNNGAEAE KAKKRKVALS EQALDNDKIP LLSLSLSLRS GEGSGGDAGS  480
RLEADSSSSN RKAALGLSTL DLTMSIKTLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-18	111	165	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-18	111	165	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-18	111	165	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-18	111	165	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812252.1	0.0	uncharacterized protein LOC112889712
TrEMBL	A0A2T7DXS0	0.0	A0A2T7DXS0_9POAL; Uncharacterized protein
STRING	Pavir.Db01175.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2754	36	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-34	G2-like family protein