PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g04190.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 411aa    MW: 45286.1 Da    PI: 6.4378
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g04190.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.9e-18112158148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     +g WT+eEd +lv++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
  Zjn_sc00008.1.g04190.1.am.mkhc 112 KGQWTPEEDRKLVKLVEQFGLRKWSCIAQILP-GRVGKQCRERWHNHL 158
                                     799*****************************.*************97 PP
2Myb_DNA-binding52.41.2e-16166206345
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                      W+ eEd  l++a+k+ G++ W+ Ia++++ gRt++++k++w+
  Zjn_sc00008.1.g04190.1.am.mkhc 166 IWSDEEDMVLIQAHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 206
                                     6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.487107162IPR017930Myb domain
SuperFamilySSF466892.25E-31109205IPR009057Homeodomain-like
SMARTSM007171.2E-14111160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-29113166IPR009057Homeodomain-like
CDDcd001677.56E-15115158No hitNo description
PfamPF139211.2E-18115172No hitNo description
PROSITE profilePS5129419.544163213IPR017930Myb domain
SMARTSM007172.5E-16163211IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-21167211IPR009057Homeodomain-like
CDDcd001672.71E-13167209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MPFDSCAQPN GPYELHPVDH PFEGNIGEYA AAGSVAVSFA TFNDLGHQYY SERESKSPVV  60
SQVGSYLPLL TPKTEASHLV GCGLGSYEMN GRFVTRSRKA SSNSLKKANV VKGQWTPEED  120
RKLVKLVEQF GLRKWSCIAQ ILPGRVGKQC RERWHNHLRP NIKKDIWSDE EDMVLIQAHK  180
EVGNKWAEIA KRLPGRTENS IKNHWNATKR RQFARRRSRS SKGPKSGTLL QSYIKSLGIG  240
PTSRKNVLAA APLAAQLAPA LPPPSPAFPV PKQAKRDSEH SPLNENNCGE VSLSFEELLA  300
PICDEFSVDM CDGLFDANDE VFQVCGIDDD FVAMNCIFNH LDYACNSGDH GMDMEMAWDD  360
VDALADCVGL EMESGSSSAA RVETAAQVKK EIDLVEMMAA TTKKSAGAED K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-461102122104C-Myb DNA-Binding Domain
1msf_C1e-461102122104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796038.11e-158transcription factor MYB41-like
TrEMBLA0A1E5V2V31e-168A0A1E5V2V3_9POAL; Transcription factor MYB98
STRINGPavir.J02497.1.p1e-161(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-61myb domain protein 98