PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g06180.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 273aa    MW: 27938.9 Da    PI: 10.1538
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g06180.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.00029253270219
                                   HHHHHHHHHHHHHHHHHH CS
                           HLH   2 rrahnerErrRRdriNsa 19 
                                   r +h++ E+rRR +iN++
  Zjn_sc00007.1.g06180.1.am.mk 253 RSKHSATEQRRRTKINDR 270
                                   899*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-4249270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEAGQAAREA HRKSVSSFVP PKPFSIVGLS IGAPASSSSS YGCACLALAQ FIITFLFAAI  60
TGAREGDLSV PVPSLPMQLF QGEKPAHDFL SLHTGGGASS PVQDRSTQAN PTHVASNAAA  120
ACDLGVHNGL KPLKLGKPQR GGGAIAMASS GLEADDSEEH VLPGGVGTFS IRQVASGQSR  180
GEAASHGGVR AAFVPGLHGS GTEGAHGADS GARAAHSGPS TMWRDSGTDQ RSRTTREGRS  240
SGSSADQGPN TPRSKHSATE QRRRTKINDR QAR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146169.28e-63uncharacterized protein LOC100279738
TrEMBLA0A3L6RRF81e-67A0A3L6RRF8_PANMI; Transcription factor BIM2-like isoform X2
STRINGGRMZM2G317450_P033e-62(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.14e-08bHLH family protein