PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g09190.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 212aa    MW: 22254.2 Da    PI: 7.3575
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g09190.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.58.3e-122247227
                                    -S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                    +++ C ++ +tGtCk+G++Ck++H++
  Zjn_sc00005.1.g09190.1.sm.mkhc 22 GQPVCEYYVKTGTCKFGSNCKYHHPK 47
                                    5789********************96 PP
2zf-CCCH345e-1198120527
                                     --SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                                     +C ++a++G+CkyG  Ck+ H++
  Zjn_sc00005.1.g09190.1.sm.mkhc  98 PCAYYAQNGYCKYGVACKYDHPM 120
                                     8********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.9572048IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-62047IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-92247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-72249IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-62549IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.09493121IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-593120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-694122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-597118IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-898120IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MALPFGGGAK NGAASDFPER MGQPVCEYYV KTGTCKFGSN CKYHHPKQDG SVQSVLLNNS  60
GFPLRPHPVE QNKMFKLGHF MALGTMDLPL QLLMGAQPCA YYAQNGYCKY GVACKYDHPM  120
GTLGCSSSAL PLSDTYPIGF PVAALTPSSS SPDLKPDYIS TKDQSVNQVA SAAAAPEPVG  180
AILPKEGYSP DNIMRAQTST TGGDSSSPGG GC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9688308e-49EU968830.1 Zea mays clone 324384 zinc finger CCCH type domain-containing protein ZFN-like 1 mRNA, complete cds.
GenBankKJ7268458e-49KJ726845.1 Zea mays clone pUT3385 C3H transcription factor (C3H35) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651248.12e-63zinc finger CCCH domain-containing protein 6
SwissprotQ5NAW21e-64C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A0Q3FWD22e-62A0A0Q3FWD2_BRADI; Uncharacterized protein
TrEMBLA2WN233e-64A2WN23_ORYSI; Uncharacterized protein
STRINGOMERI01G09890.12e-66(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2962334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.29e-26C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]