PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00005.1.g01150.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 263aa MW: 29360.1 Da PI: 9.7704 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.1 | 1.8e-11 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i nks r f kR++ + K A+ L +LC+++++v+++++ Zjn_sc00005.1.g01150.1.sm.mk 11 IGNKSIRRAAFRKRQASLVKMASDLTTLCGIKACVVVYGE 50 88************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.769 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.4E-9 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.72E-15 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.90E-21 | 2 | 75 | No hit | No description |
Pfam | PF00319 | 3.5E-11 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MAPKKVNLQW IGNKSIRRAA FRKRQASLVK MASDLTTLCG IKACVVVYGE GKSQPEVWPS 60 VPEAKQLIHH FNAMPDNLGS HKKTLNQEDF LRNRISNLHY QMSKFDHENY EYETLFLLHK 120 TMAGHQTSLA GLTNQALVSI KCMVEAKTKK IKERLQQLDI KKGQILQEPL VHPLLFSSQQ 180 QGDPIGFFPL ASDPLILGFS HHAYISATLF SQAHIPAARS IPYVDMVEAP ASTLVVGSIL 240 QCIHYLKANH TSGIVAPLHS GIY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317822.1 | 1e-55 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1E5VN01 | 6e-55 | A0A1E5VN01_9POAL; Agamous-like MADS-box protein AGL80 | ||||
STRING | Sb05g023895.1 | 6e-55 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 5e-23 | M-type_MADS family protein |