PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00004.1.g10200.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 217aa MW: 24991.6 Da PI: 9.9772 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 54.2 | 2.6e-17 | 83 | 129 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+ellP++ K +K+++L +A++Y+ksLq Zjn_sc00004.1.g10200.1.sm.mk 83 FHNFSERRRRDRINEKLKALQELLPNC-----SKTDKVSMLDEAIDYLKSLQ 129 59************************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-19 | 76 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-21 | 77 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.508 | 79 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.04E-17 | 82 | 133 | No hit | No description |
Pfam | PF00010 | 1.3E-14 | 84 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-18 | 85 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MAGESQNDKA GRIGTVRTQS SLISPAMTQK FIEIRWPEYY LGLNVGGSNR PDHLLGEVRQ 60 ELMEEGRVPR STPPTRRSRS AEFHNFSERR RRDRINEKLK ALQELLPNCS KTDKVSMLDE 120 AIDYLKSLQL QLQMLVMGKG LAPVVPPELP QYMHYIKADP AQMPSPFRPS QQPRPFQITQ 180 ADPQRKYVES DFLSQMQNLH PSDQPPQNFL RPQKLQL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 92 | ERRRRD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022684500.1 | 2e-87 | transcription factor PIF1 | ||||
TrEMBL | A0A1D6DZ90 | 2e-88 | A0A1D6DZ90_MAIZE; Protein SPATULA | ||||
STRING | Si011759m | 8e-87 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9562 | 30 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 6e-27 | phytochrome interacting factor 3 |