PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g08720.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 470aa    MW: 50506.6 Da    PI: 7.0167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g08720.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12191242155
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +r +h ++Er+RR+++N+ ++ Lr+l+P +   +  + + a+i+  A++++k+L+
  Zjn_sc00004.1.g08720.1.am.mk 191 QRITHIAVERNRRRQMNEYLAVLRSLMPDS---YVHRGDQASIVSGAIDCVKELE 242
                                   799***************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-17189263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.86E-13189246No hitNo description
PROSITE profilePS5088814.424190241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9191242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-13192257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-10196247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MSLELPRMHT HPAVSGFSIA VKISWSIRLR GEGDLAIHAT GRLKHFLAAA AAPTACPSTK  60
LALSFTSNSA ICMPDSTAAQ LTRARALSYA MLYTSTIDMT LQEALCAPSS DVLIYDTFNA  120
AACAPSATGS FLVVGNGATE AMALPVPMEV PVAAPTPAQE AEGETRAVHQ GRRKRRRRER  180
SVKNHEDAEN QRITHIAVER NRRRQMNEYL AVLRSLMPDS YVHRGDQASI VSGAIDCVKE  240
LEQQLQSMEA QKRALLAAQH QQKRNSMAVE RDTAQMPMSN SPKDGAAGEK GEEEEEAAPA  300
SPPPFSRFFR YPQYVWLHAR PREDGAEEAS RASGVADVEV SVVVDAHASV RVMAPRRPGQ  360
LLKMVAGLQA LGLAVLHLNV TAADAVVLYT LSLKWPLCRG ESLGGELGRS IDMAISAAKG  420
YRDCVEEGCA LTAADEIAAA VHHVMCIIEA EATTQQRVLA AGVGQTPGLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165177RAVHQGRRKRRRR
2171177RRKRRRR
3171178RRKRRRRE
4172176RKRRR
5172179RKRRRRER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0613234e-71BT061323.1 Zea mays full-length cDNA clone ZM_BFb0135D07 mRNA, complete cds.
GenBankKJ7278454e-71KJ727845.1 Zea mays clone pUT5889 bHLH transcription factor (bHLH134) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319605.11e-108transcription factor bHLH96-like
TrEMBLA0A1B6PMY01e-107A0A1B6PMY0_SORBI; Uncharacterized protein
STRINGSi010485m3e-99(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-36bHLH family protein