PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00003.1.g15270.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 588aa MW: 62889.1 Da PI: 7.0559 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 269.6 | 1e-82 | 226 | 587 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 +L e+Ae ++gd +a+Larl+++ a +g+p++R a+yf+eAL+ l+ ++ +p++ ++ ++ ++ a Zjn_sc00003.1.g15270.1.am.mk 226 GQLAEAAELAEAGDVLGSRAILARLNNRfpaAPTAGTPLHRCAFYFKEALRVALST---TTG-D-APTAPTPVDVLLKIGA 301 689************************999555566******************99...222.2.45555567899***** PP GRAS 81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....ske 156 +k+fsevsP+++f+h+t+ qa+l+++ g+ ++H++Df+i+ G QW++L+q+La+R+ + sl++T+++s s+ Zjn_sc00003.1.g15270.1.am.mk 302 YKAFSEVSPVVQFAHFTCVQAVLDELGGAGCIHVLDFEIGVGDQWASLMQELAQRR-PGTSLKVTALVSTPSSsphhrLPL 381 ******************************************************95.558******988555567766678 PP GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236 el+ ++e+L++fA+ +vpf+f v+ +le+ ++ e L++ g+a+aV+l + +++s +L+lv++l + Zjn_sc00003.1.g15270.1.am.mk 382 ELQLVQENLSSFAADARVPFQFAVF---SLESTDPtEILAMAAGDAIAVHLPVGCSVHT---PAMPS----ILHLVRRLGA 452 99**********************8...566665515578888*********9776654...56666....********** PP GRAS 237 kvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316 k+vv v++ +d+ ++ +F++++++a++ ++ l++sl+a s + k+Er l++++i+++v + + + + Wr Zjn_sc00003.1.g15270.1.am.mk 453 KLVVTVDRSCDRrSELPFAAHLFQAFQSCVFLLESLDAV---GSTDSDKIERLLIQPRIESCVVSKYRGAI-AGDRTPPWR 529 ************8999********************998...799999********************955.556699*** PP GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + l +aGF pv+ s++a++qa++ll+kv+++g+rve++ gsl+l W++ +Lvsv+ Wr Zjn_sc00003.1.g15270.1.am.mk 530 ALLASAGFVPVQASSFAEAQADSLLKKVPVRGFRVEKRAGSLLLHWQRGELVSVTTWR 587 *********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.841 | 198 | 567 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.5E-80 | 226 | 587 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 588 aa Download sequence Send to blast |
MLRFLDFHRI SLAQAPGWKG VLLCCGCTAC RLSHSASQLS PSLCRSHTRH TIPSLSSILF 60 SSVLDHHPSA KPKPLPPRSA STLSSPLTDV AALAGATNAK SVSPPPPAWP PGDDDGAPGP 120 GGKEDTSWIH HLPPLDHMSS QQQDNTFLHW IIGGDVSTAQ AMPSGVTEHH PVLADSVLPH 180 QPLPFPPPQP LMFHPSMDIA VTRHQPTAAV LKPTKPEEDD TAAAVGQLAE AAELAEAGDV 240 LGSRAILARL NNRFPAAPTA GTPLHRCAFY FKEALRVALS TTTGDAPTAP TPVDVLLKIG 300 AYKAFSEVSP VVQFAHFTCV QAVLDELGGA GCIHVLDFEI GVGDQWASLM QELAQRRPGT 360 SLKVTALVST PSSSPHHRLP LELQLVQENL SSFAADARVP FQFAVFSLES TDPTEILAMA 420 AGDAIAVHLP VGCSVHTPAM PSILHLVRRL GAKLVVTVDR SCDRRSELPF AAHLFQAFQS 480 CVFLLESLDA VGSTDSDKIE RLLIQPRIES CVVSKYRGAI AGDRTPPWRA LLASAGFVPV 540 QASSFAEAQA DSLLKKVPVR GFRVEKRAGS LLLHWQRGEL VSVTTWRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-24 | 256 | 587 | 32 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002468689.2 | 0.0 | scarecrow-like protein 6 | ||||
TrEMBL | A0A0A9H9V7 | 0.0 | A0A0A9H9V7_ARUDO; Uncharacterized protein | ||||
STRING | BRADI1G78230.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6723 | 29 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 2e-73 | GRAS family protein |