PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g07890.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 754aa    MW: 84564.3 Da    PI: 4.5689
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g07890.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.34.5e-17671971128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatg 71 
                                     lp+G++F+P+d++l+  +L+++v +        ++++ v i++  +   ++P+d+p  ++ + +  yfF+kr +     
  Zjn_sc00003.1.g07890.1.sm.mkhc  67 LPRGVEFNPSDSDLL-WHLAAEVGNGLarrhpfISEFIVpIDDDkGFSCTHPQDIP-GIRLDGRASYFFHKRFHLLC-- 141
                                     699************.7788888776656666655556668877568888******.666788999*****998765.. PP

                             NAM  72 krknratksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                        n+  +s  W++ g+ ++++  +g+l g+++ +++y  + ++++++ktdW +h+y++
  Zjn_sc00003.1.g07890.1.sm.mkhc 142 --DNKNGQSISWQKIGTPTSIIL-DGTLCGCREEFILYayNMSDNNPQKTDWRLHQYHI 197
                                     ..344445567************.999*********99666799999**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-2261214IPR003441NAC domain
PROSITE profilePS5100521.18167215IPR003441NAC domain
PfamPF023655.7E-768197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MAAGTHLPPS RLSTDPDHLP LSVRRGGPVG SSVPLAEEAP VRDRREARTD AGDADGAVKK  60
HQVWPGLPRG VEFNPSDSDL LWHLAAEVGN GLARRHPFIS EFIVPIDDDK GFSCTHPQDI  120
PGIRLDGRAS YFFHKRFHLL CDNKNGQSIS WQKIGTPTSI ILDGTLCGCR EEFILYAYNM  180
SDNNPQKTDW RLHQYHIRDR MKDEEELVLS KIFYHSQNNL CESAEKNHAE YELPCKDILD  240
YTETDDLDHM SLQERYRILQ ADKSSCPAEI PAGIILDVGT SGTAPKRNHE GATYKEDICS  300
MLQEIPSAPP IVENIDDGNG TSFLGKDLSG TQLSRMECYV GSNPNQTACS SDNLELPATQ  360
PTHGSGCNQL VVRKHGTFLI DVKSEPELES YANDSSGSQG VSHHSTENVC LEGADSVPGH  420
VTKDHENEML HDHRDFVEKM SDICTSISVE ATSQDKNTHD DSSVPLPLLG VKSELTEGDF  480
LGLCENSCKN AVENIFEKTH TQILDHDGSI AFQDAVTNVE GIAYSSCRRR RRKTATDSIE  540
KALDEDAPGL LQILMDKGIT VEEIKLYGAE EDDEMVPDAE NNFDDLENII IKSRYLKFRD  600
CPVEWGWCRD LQSFIFVFRS HNRIVLERPE YGYATYFFEV VQSLPIEWQV GEDLTEGEAR  660
VLEEYGWIRN CGLGTMLNYR DRVVHDRWTE KCVADWRMKI GKLLMAGYAE GQTITTHLPK  720
KLGDLLEDAS DVGIDIKLED TCDIEIDVKL EDPF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9453613e-45EU945361.1 Zea mays clone 261633 mRNA sequence.
GenBankEU9730653e-45EU973065.1 Zea mays clone 392770 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795332.10.0uncharacterized protein LOC112875626 isoform X1
TrEMBLA0A2S3IST90.0A0A2S3IST9_9POAL; Uncharacterized protein
STRINGPavir.Ib00786.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.13e-33NAC family protein