PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g07530.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 632aa    MW: 68155.4 Da    PI: 6.3987
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g07530.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.21.2e-09298341155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++gr++A+++d      +       ++t+++Aa+a++ a++k++g
  Zjn_sc00003.1.g07530.1.sm.mk 298 SQYRGVTRHRWTGRYEAHLWD------NSG-----YDTEDKAARAYDLAALKYWG 341
                                   78*******************......344.....9**99*************98 PP
2AP244.24.8e-14384435155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV+++++ grW A+I  +     +k  +lg++ t e+Aa+a++ a+ k++g
  Zjn_sc00003.1.g07530.1.sm.mk 384 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEDAAEAYDVAAIKFRG 435
                                   57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-16298349No hitNo description
SuperFamilySSF541714.25E-13298351IPR016177DNA-binding domain
PfamPF008471.4E-7298341IPR001471AP2/ERF domain
SMARTSM003807.8E-20299355IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-10299350IPR001471AP2/ERF domain
PROSITE profilePS5103214.276299349IPR001471AP2/ERF domain
PRINTSPR003673.6E-6300311IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-17384444IPR016177DNA-binding domain
CDDcd000184.01E-24384445No hitNo description
PfamPF008472.1E-9384435IPR001471AP2/ERF domain
SMARTSM003801.1E-33385449IPR001471AP2/ERF domain
PROSITE profilePS5103218.927385443IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-18385443IPR001471AP2/ERF domain
PRINTSPR003673.6E-6425445IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MASSSNWLGF SLSSRMAMEP PSSSVSEHAQ HLPAPASATM SPSPHNTAPC NFLFSPSAQM  60
AAPSHGYYLG GAYGDGSTTA GVYYSHPNLP VMPVKSDGSL CNMEGHYCHP ASPPLFGILV  120
MKLCISLSDK PALLCMDNEA GMMALSSPKL EDFLGGGHAT ATYYSHQDVG QEEDDASKSY  180
EYQQIVPYNF QPLTLAEMLQ NAAAPMEETM AATKDLVVTD YGGCYTNGEM QPLSLSMMSP  240
GPQSSGCVSA APQQHLITAL AAEAQGRSNG GGEQCVGKKR GTGKGGRKSI DTFGQRTSQY  300
RGVTRHRWTG RYEAHLWDNS GYDTEDKAAR AYDLAALKYW GPATSINFPL EHYREELEEM  360
KTMTRFEYVA HLRRRSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTYSTQE  420
DAAEAYDVAA IKFRGVNAVT NFDITRYDVE KIMESNVLLP GEEARKVKAI VPAMPHNSGW  480
ELNPTGEACT EWRMVVLGSH QETVAYAEAD VLQNGIMGRG GDPNPSMHGV VGLDVECQAQ  540
PDLDGSGCRT TGGVSFSNSS TLVISLGNSR EGIPAERLGL AMLYNKHPNA AVSLGTISPW  600
TQMQAPVTAS HMLKPPSAAV SHLPVFAGWA DA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678556.10.0AP2-like ethylene-responsive transcription factor ANT isoform X1
SwissprotQ84Z021e-118CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0A9LT820.0A0A0A9LT82_ARUDO; Uncharacterized protein
STRINGSi034722m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-103AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]