PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g08340.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 358aa    MW: 38209.3 Da    PI: 9.7871
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g08340.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.97.1e-3873169196
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                                   +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i
  Zjn_sc00002.1.g08340.1.am.mk  73 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRLDAVVTICYEAQARLRDPVYGCVAHI 153
                                   7***********************9989***************************************************** PP

                        DUF260  81 lklqqqleqlkaelal 96 
                                   ++lqqq + +++e+a+
  Zjn_sc00002.1.g08340.1.am.mk 154 FALQQQQRAVRKEAAK 169
                                   *********9999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.84772174IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-3773168IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MPSIRFYTTI PPCLPLILSP PERRVLPRCL HPPPDLRLRA MSSGGCTSTP PGCGGGGGCP  60
SGSGGPGGGG GGPCGACKFL RRKCVSGCIF APYFDSEQGA AHFAAVHKVF GASNVSKLLL  120
QIPAHKRLDA VVTICYEAQA RLRDPVYGCV AHIFALQQQQ RAVRKEAAKP GTLLRAGTRR  180
ILRRRIVIPA VRCLPPPVAY YYAVVHLGLR IVLGWWCQRQ SLVVNLQAEL TYLQAHLATL  240
ELPSPPPLPA PPQMPVPAPF NIADLPSATN VPTTVDLSAL FDTPPQAHQW ASVQQQHHHQ  300
LRQPTMTSYG ASVRGGHGMA ESSSAGGGGD LQALARELLD RQRSGVKLES PPPPPPHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-34691667103LOB family transfactor Ramosa2.1
5ly0_B3e-34691667103LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0614311e-132BT061431.1 Zea mays full-length cDNA clone ZM_BFb0145J09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160420.13e-70LOB domain-containing protein 30
TrEMBLA0A0E0GJP45e-86A0A0E0GJP4_ORYNI; Uncharacterized protein
STRINGONIVA03G11070.18e-87(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4217433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-49LOB domain-containing protein 18