PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00002.1.g08340.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LBD | ||||||||
Protein Properties | Length: 358aa MW: 38209.3 Da PI: 9.7871 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.9 | 7.1e-38 | 73 | 169 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i Zjn_sc00002.1.g08340.1.am.mk 73 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRLDAVVTICYEAQARLRDPVYGCVAHI 153 7***********************9989***************************************************** PP DUF260 81 lklqqqleqlkaelal 96 ++lqqq + +++e+a+ Zjn_sc00002.1.g08340.1.am.mk 154 FALQQQQRAVRKEAAK 169 *********9999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.847 | 72 | 174 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-37 | 73 | 168 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MPSIRFYTTI PPCLPLILSP PERRVLPRCL HPPPDLRLRA MSSGGCTSTP PGCGGGGGCP 60 SGSGGPGGGG GGPCGACKFL RRKCVSGCIF APYFDSEQGA AHFAAVHKVF GASNVSKLLL 120 QIPAHKRLDA VVTICYEAQA RLRDPVYGCV AHIFALQQQQ RAVRKEAAKP GTLLRAGTRR 180 ILRRRIVIPA VRCLPPPVAY YYAVVHLGLR IVLGWWCQRQ SLVVNLQAEL TYLQAHLATL 240 ELPSPPPLPA PPQMPVPAPF NIADLPSATN VPTTVDLSAL FDTPPQAHQW ASVQQQHHHQ 300 LRQPTMTSYG ASVRGGHGMA ESSSAGGGGD LQALARELLD RQRSGVKLES PPPPPPHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-34 | 69 | 166 | 7 | 103 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-34 | 69 | 166 | 7 | 103 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061431 | 1e-132 | BT061431.1 Zea mays full-length cDNA clone ZM_BFb0145J09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160420.1 | 3e-70 | LOB domain-containing protein 30 | ||||
TrEMBL | A0A0E0GJP4 | 5e-86 | A0A0E0GJP4_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G11070.1 | 8e-87 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP42174 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 1e-49 | LOB domain-containing protein 18 |