PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016651309.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 408aa    MW: 44714.1 Da    PI: 7.9073
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016651309.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.43.5e-15211257455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn+ Er+RRdriN+++  L++l+P+a      K +Ka++L ++++Y+ +Lq
  XP_016651309.1 211 VHNQSERKRRDRINQKMKALQRLVPNA-----SKTDKASMLDEVIKYLEQLQ 257
                     6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.104207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17207274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-19210284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-13211257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.50E-16212261No hitNo description
SMARTSM003531.8E-16213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MQQNHPNTSR HVPLSTYDVR ELKLENGQLA MHGLGGLLPT SQAKHTWGRA GDTLESVVHQ  60
ATHHKREPNL IHNGQTPANI SSMVASSGRT WTDEGGQVPL AEEWMRKRTR SDSDYHGNNF  120
SGSTTSIHEE HADPSTCASP SPSASAKLCR DNEKTMTTWA SFESLPSLKS TKSPDEDSAS  180
HGGLENQDDG QETTKDGESG RSTRPKRAAA VHNQSERKRR DRINQKMKAL QRLVPNASKT  240
DKASMLDEVI KYLEQLQAQV QMMSSVRNMP HMNMNMNMMM PLGMQQQQQH LHQMSFLAHM  300
GMGGNVGPLG LGMGMGIHPT PVVAAAPTFI PPFMVPPLMP RHPPSQAKPD SACTNASDSL  360
PDPYGALLAQ QSMNMDLFNR MAALYHQQVN HTTAATSSPS QSNHVQGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215220ERKRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016651309.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016651309.10.0PREDICTED: transcription factor PIF7
TrEMBLA0A251PB290.0A0A251PB29_PRUPE; Uncharacterized protein
STRINGXP_008239975.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.18e-40bHLH family protein