PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016650496.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 311aa MW: 35680.1 Da PI: 8.3383

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016650496.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.5	8.1e-22	31	119	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YA ++GF +r s+++k +++ge+t++++vC k+g++ +++ + ++rr+r tr+gCkakl + k+k ++k+ v +++ HnH+++ XP_016650496.1 31 NFYNMYAAKAGFGIRCSTTRKCTMTGEVTSKEYVCCKQGYALTSTVS--HKRRRRGCTRIGCKAKLAILKMKdKNKYIVVGFNEVHNHDMT 119 6***************************************99888..99*************999989************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-19	31	119	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.5E-23	240	311	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MECERQVTPE VRSELKPKLK LEFDCCDDVF NFYNMYAAKA GFGIRCSTTR KCTMTGEVTS 60 KEYVCCKQGY ALTSTVSHKR RRRGCTRIGC KAKLAILKMK DKNKYIVVGF NEVHNHDMTT 120 VDKFHLLRSH RNLTEATKAY SADMSKVNVP VPKQLSLLEV QVGGLENVGF VKRDVYNYVR 180 DVCGEVIGHD AELLKEHFMT MQEKNESFYF KMEVDSEGRM GNVFWSDVRS RRAYGFFGDV 240 VVFDTTFNTN RYGMVFAPLL GFNNHRQTVL FGCAFLTSET TDSFVWLLEE FKKTMPGEPP 300 KMIITDQDAA M

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016650496.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016650496.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A067D5X9	1e-104	A0A067D5X9_CITSI; Uncharacterized protein
TrEMBL	V4URE3	1e-102	V4URE3_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_008228816.1	1e-150	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14110	4	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-54	FAR1-related sequence 5