PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016650018.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Protein Properties

Length: 142aa MW: 16058.5 Da PI: 4.4852

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016650018.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.7	7.3e-12	27	115	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgrsefelvv 94 f+ vlt+ v +lv+p kf ++ + + t+ + +g+ We+ + ++s+ y ++Wk F+ +n+Lk+gD +vF+ l+ s+++lv+ XP_016650018.1 27 FDVVLTKTTVKPIYQLVVPGKFSATLP----SCTIPTFLTFRGKNWEMIY--HGSSS-YKRLDNWKVFAIDNNLKVGDACVFEqLEC-SSTRLVF 113 667888888888899999999987664....2335689999*******..66665.55555******************5444.5555554 PP EE CS B3 95 kv 96 +v XP_016650018.1 114 RV 115 43 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.89E-16	22	116	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.2E-14	22	117	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.32E-16	25	119	No hit	No description
PROSITE profile	PS50863	10.179	27	121	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.2E-10	28	114	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0031	31	121	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MGDLPPSNPV IELEGDEFWP LSEKPFFDVV LTKTTVKPIY QLVVPGKFSA TLPSCTIPTF 60 LTFRGKNWEM IYHGSSSYKR LDNWKVFAID NNLKVGDACV FEQLECSSTR LVFRVQILRG 120 DIPSEFLDKL DGDNVDAPIV LE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016650018.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016650018.1	1e-101	PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBL	A0A314XQ22	8e-92	A0A314XQ22_PRUYE; B3 domain-containing protein
STRING	EMJ22139	7e-91	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9722	26	40