PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016649806.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 1008aa MW: 113193 Da PI: 7.8296

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016649806.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.6	1.5e-08	242	300	22	81
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 r+k ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++ + e++ +y XP_016649806.1 242 TRSKTRADKDREVAEFLQKHGVNRDAKTAGTKWDNMLGEFRKVYEWERGAEREQV-GKSY 300 56788889999*************************************9755444.3445 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	5.49E-15	825	990	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	8.0E-7	856	996	No hit	No description
CDD	cd00180	2.03E-12	861	990	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 1008 aa Download sequence Send to blast
MGDNKGDTSK KQPQQQQTQQ QQQISPSPND PLEDQLLPTE ITRARHHQPQ PPPAAAPFNI 60 PAPLFVPSGA ATSSSSPFDQ QHFEAAVNPK RPRYTTGQWK LLPSPSSQTK QTQIPILSKE 120 STPSPNPKST QLPQPHVTPT GAASSSDTAS SPPAHSPLPS LSATSGQDTN KTEGDLQNPV 180 HNHQFRKGKY VSPVWKPNEM LWLARGWRIQ YQGGPAGGSS DHGSGSSSRT EQIPTETGTP 240 HTRSKTRADK DREVAEFLQK HGVNRDAKTA GTKWDNMLGE FRKVYEWERG AEREQVGKSY 300 FRLSPYERKL HRLPASFDEE VFEELSQFMG SRMRTPQSRL GSVGDDSRSA FVVTRSLTQP 360 PSFKEDEFPP SGSKKQLMIM SGGGEPFYHG GRGTLLGFHH HDQSSLDFTA GLSSSSASKE 420 LRRIGKIRMT WEELVSLWAE EGEHHRGRVR VQGSSFLNAD ELTFFDDSMV ACTMEAFEDG 480 PLRGFSVDRF VSGQQVKVFG RRKPSSSTSG FNEKVQLSLP ESSSRSIPST EFQDPTEYYV 540 GCLGAPPPSL PSLPELQWYL QEPPPEELRF PLRKDVYRDL PQGKEIFFTT STELLDCRAI 600 TYDIVSPIIR TNPSLSASTA TSRDSFIPIW DDCINRLVSK FCSLEMAFIR RPNASSPTEP 660 LLDQWPNVTG FVRNFCLFRG EETHQLRDSH DMNPSSSIVE KILWTYMDLP YIFGYYAIGY 720 VVTFCALSRS QDRINRTDLA TIDLSSPSER LKALVPCYRI AGLLPLLADR CFNNTNCNKL 780 LPHSDFERLD LGNGRNIVEM TPTTVTRFFC NVRKWTAVKE IYDFLDHRIP HAEFIHRSLE 840 KDLGLVFKPR GYKCKPTNCE QLVEALKYVT KALVALHDLS FMHRDISWEK VMRRTERENE 900 WFVCGFEEAV GAPQIYPRRA VAAGESAARV RHAPEMERGL HGVKVDVWGV GYLVRSCGLT 960 GVPKMLRELQ NRCLDQNPEQ RPTAADCYHH LLQLQSSLQS ATAGGALM

Sequence ? help Back to Top

Protein Sequence Length: 1008 aa Download sequence Send to blast

MGDNKGDTSK KQPQQQQTQQ QQQISPSPND PLEDQLLPTE ITRARHHQPQ PPPAAAPFNI  60
PAPLFVPSGA ATSSSSPFDQ QHFEAAVNPK RPRYTTGQWK LLPSPSSQTK QTQIPILSKE  120
STPSPNPKST QLPQPHVTPT GAASSSDTAS SPPAHSPLPS LSATSGQDTN KTEGDLQNPV  180
HNHQFRKGKY VSPVWKPNEM LWLARGWRIQ YQGGPAGGSS DHGSGSSSRT EQIPTETGTP  240
HTRSKTRADK DREVAEFLQK HGVNRDAKTA GTKWDNMLGE FRKVYEWERG AEREQVGKSY  300
FRLSPYERKL HRLPASFDEE VFEELSQFMG SRMRTPQSRL GSVGDDSRSA FVVTRSLTQP  360
PSFKEDEFPP SGSKKQLMIM SGGGEPFYHG GRGTLLGFHH HDQSSLDFTA GLSSSSASKE  420
LRRIGKIRMT WEELVSLWAE EGEHHRGRVR VQGSSFLNAD ELTFFDDSMV ACTMEAFEDG  480
PLRGFSVDRF VSGQQVKVFG RRKPSSSTSG FNEKVQLSLP ESSSRSIPST EFQDPTEYYV  540
GCLGAPPPSL PSLPELQWYL QEPPPEELRF PLRKDVYRDL PQGKEIFFTT STELLDCRAI  600
TYDIVSPIIR TNPSLSASTA TSRDSFIPIW DDCINRLVSK FCSLEMAFIR RPNASSPTEP  660
LLDQWPNVTG FVRNFCLFRG EETHQLRDSH DMNPSSSIVE KILWTYMDLP YIFGYYAIGY  720
VVTFCALSRS QDRINRTDLA TIDLSSPSER LKALVPCYRI AGLLPLLADR CFNNTNCNKL  780
LPHSDFERLD LGNGRNIVEM TPTTVTRFFC NVRKWTAVKE IYDFLDHRIP HAEFIHRSLE  840
KDLGLVFKPR GYKCKPTNCE QLVEALKYVT KALVALHDLS FMHRDISWEK VMRRTERENE  900
WFVCGFEEAV GAPQIYPRRA VAAGESAARV RHAPEMERGL HGVKVDVWGV GYLVRSCGLT  960
GVPKMLRELQ NRCLDQNPEQ RPTAADCYHH LLQLQSSLQS ATAGGALM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016649806.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016649806.1	0.0	PREDICTED: uncharacterized protein LOC103333428
TrEMBL	A0A251QMY8	0.0	A0A251QMY8_PRUPE; Uncharacterized protein
STRING	XP_008234479.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11857	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	4e-08	Trihelix family protein