PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016515057.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 719aa MW: 80237.6 Da PI: 6.2421 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.4 | 8.1e-06 | 125 | 145 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C ff++ G+C GdrC+F H XP_016515057.1 125 VPCIFFQQ-GFCLKGDRCPFFH 145 79******.***********88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.122 | 31 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 5.6E-11 | 32 | 86 | No hit | No description |
SMART | SM00356 | 0.0023 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.455 | 62 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.73 | 64 | 87 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.573 | 121 | 148 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-4 | 122 | 147 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 124 | 146 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.09 | 126 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 719 aa Download sequence Send to blast |
MVGPTPPQQL QIQTPSTAAA PATLSAEDEA LKRNTDCVYF LASPLTCKKG SECEYRHSDV 60 ARLNPRDCWY WLNGSCLNPK CGFRHPPLDG FLGAQVQTPT GSSVPPVASV APTPNVPYGS 120 GKQGVPCIFF QQGFCLKGDR CPFFHAPISV PNKAPPHPVS TASTEKNPFK KAFGRLEKCV 180 QGKTFSQANT WKSGGLPLQA QPIGKLGTHL SKNDSAFNEN VLPPNSVIDV VHHRHKPKGV 240 PPTNGNPVGR SNRVHQSVRF DDHSSIQNKG DDISRELSPG FDVLVDDELR GNDFYHGEDQ 300 YGRDAERNEY DIGRSADYTS VADNDQDAYH DVYERDSHDR LAGRSGRVQH RASSEIIQGE 360 SAHLERRRYG RAYSPEEVRE SDLRHRLSKH KRVNGLRSVI SHDYASEKHV DDRGYQGSRR 420 DRQHLPSHDS SVASRLRGRI KLPSRSSSPT NGADMGLDRE TDRARNRGRL SLERPQLFSQ 480 QGRLRDRIKG RVQEDLSNAG RNNSGPRLRK DISENNSDFS GPRRLAELKG RKTAETSEQN 540 VDEQQALGKR KFQKHDSYQQ SGGDLSFEGP MPLQEILKRK RRSETGMPSD KSEDYQHERK 600 DHSLVTSSIS RSRSDLGQKE ESDPPSGEKN GPQETISAGH QSPLHDGANE LEAEEGMIVE 660 EEDDQDPEGH DQRDYDYEQV DGEDYNLDEG ENADAGEEYL DEDDDDGDDF AKKMGVVFS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016515057.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 17-like | ||||
TrEMBL | A0A1S4DNQ4 | 0.0 | A0A1S4DNQ4_TOBAC; zinc finger CCCH domain-containing protein 17-like | ||||
STRING | XP_009759890.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4024 | 16 | 33 |