PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016511126.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 337aa    MW: 37520.1 Da    PI: 9.6052
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016511126.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45e-112071147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+  l  +v ++G+g W+tI +          R+  ++k++w++ 
   XP_016511126.1 20 KLKWTPEEEVALRAGVLKYGPGKWRTILKDPEfsgvlYLRSNVDLKDKWRNM 71
                     689**********************************88***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.66E-151786IPR009057Homeodomain-like
SMARTSM007178.2E-61974IPR001005SANT/Myb domain
PROSITE profilePS500907.412072IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.5E-132071IPR009057Homeodomain-like
PfamPF002491.4E-72071IPR001005SANT/Myb domain
CDDcd116601.15E-172272No hitNo description
SMARTSM005262.1E-12133198IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467856.53E-16134212IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.879135203IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.8E-14138204IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.1E-7140196IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MVNGLFWELH FLDALMGAPK LKWTPEEEVA LRAGVLKYGP GKWRTILKDP EFSGVLYLRS  60
NVDLKDKWRN MTVMANGWGS REKAKLALKR MIQAPMQGES SAAVTSEAES DAEIPEAWPA  120
TTSRGSPQHG GSRRSILRLD NLIMEAISNL NEPGGSYQAT ISTYIEDQYW ETPNIRRLLS  180
AKLKYLTATG KLIKMKRKYK VAPKLTFANK RRNLPLPLLD SSQRICSKVD QDDINMLTRS  240
QIDLDLEKMK NMSPQEAAAA AAQAVAEADT ATAEAAEAAR KAEAAAAEAE AAQAFAEAAM  300
KTLQERSIPR MVRHFPLSFL SFLFPFPLSL ESFWVNV
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016511126.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X1
SwissprotQ8VWK42e-87TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A1S4DCJ60.0A0A1S4DCJ6_TOBAC; telomere repeat-binding factor 1-like isoform X1
STRINGXP_009772620.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28642448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.38e-82telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]