PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016510501.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 298aa    MW: 33324.5 Da    PI: 10.1094
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016510501.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-19161194134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+ttkTplWR+gp g+ktLCnaCG+++rk +
  XP_016510501.1 161 CSDCNTTKTPLWRSGPKGPKTLCNACGIRQRKAR 194
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.0E-19155206IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.23E-13158195No hitNo description
PROSITE profilePS5011412.651159191IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.0E-16159194IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.04E-12160188No hitNo description
PROSITE patternPS003440161186IPR000679Zinc finger, GATA-type
PfamPF003207.9E-17161194IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MIPTYRNSSP SSPSFPFELN NNEVHDLSHI NPLVSPSYQV ASSSSYSSCQ TFFNNSTTNQ  60
DQMGYYRSQF YQPQYQPEVD NFASRSGSHD HLEKKNKGPK LTLWKKGDKL MQKMKNSDHA  120
HIKLKLEDQK KQQSYPNLET DYSSNSSSNN SNNNNIPIRV CSDCNTTKTP LWRSGPKGPK  180
TLCNACGIRQ RKARRAMAAA AAANGETLTT ETSSSSMKKK VKHLHKEKIT NVNVTLPYKK  240
RCKFGPSSSS NTAPKKLGNF EDFLIKLSNN LALHQIFPQD EKEAAILLMA LSSGLVHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7475020.0JQ747502.1 Nicotiana tabacum GATA-like transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016510501.10.0PREDICTED: putative GATA transcription factor 22
TrEMBLA0A1S4DAT10.0A0A1S4DAT1_TOBAC; putative GATA transcription factor 22
STRINGXP_009604300.11e-106(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.15e-16GATA family protein