PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016509681.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 490aa    MW: 57861.6 Da    PI: 9.5845
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016509681.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.46.5e-1529106290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fY+e+A+  GFs++k++s+k+   ++    t++C +   r+++ ++          +  +Cka+l+v ++++g w+v+k++++HnH++ 
  XP_016509681.1  29 FYKEHARLKGFSIVKRNSNKK-GGDTARYITYCCDRARIRKTKFTT----------KSNNCKARLTVVLDDSGCWRVSKVVHDHNHDFL 106
                     9***************99998.55558899******9999987666..........7789**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1129107IPR004330FAR1 DNA binding domain
PfamPF105511.8E-31219310IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MENEFTEDDM VVGPISGIRF RDNDYLFAFY KEHARLKGFS IVKRNSNKKG GDTARYITYC  60
CDRARIRKTK FTTKSNNCKA RLTVVLDDSG CWRVSKVVHD HNHDFLPSIS RLMTRHRSVF  120
YSLKRDLVAH DRSGITPSKN IRLAEVQRGG LQNLGCTPKD CRNFILKSRN FEMQEGDAQS  180
LLNFFREMQV KDMEFFYSID VDNIGRLRNV VWEQFHDAIC FDTTYLVNRY NMPCATFVGI  240
NHHRQSILLG CALMSHEDIN SYKLVFRTWL DAMGNVHPDA IITDQCQSIK PAIAEVMPHT  300
IHRYCIWHIF SKLPLYLSGV RPSKIARGEF KSMVLDSITV EVFERKWTKY IAKYNLHTRN  360
WFNKFYSKKE KWVPVYLDVY FWAGMLSTQR SEGMHAFFDG YITRQNTLRM FVHQYELAIR  420
AKHEKELKAE YRSKDFQIVC ESLFKWEEQH IPKRIYKHLP EINNTVLLQY GGKEWFVGMT  480
IGERRWLKDG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016509681.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1S4D8H60.0A0A1S4D8H6_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_009618387.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.13e-80FAR1 family protein