PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016509241.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 500aa MW: 53681.4 Da PI: 8.1808 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_016509241.1 58 FVCEICNKGFQRDQNLQLHRRGH 80 89*******************88 PP | |||||||
2 | zf-C2H2 | 16.7 | 2e-05 | 134 | 156 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ XP_016509241.1 134 FKCERCTKKYAVQSDWKAHMKTC 156 89*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.02E-7 | 57 | 80 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 57 | 80 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 8.0E-5 | 58 | 80 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 58 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 99 | 129 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.6E-5 | 122 | 155 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.02E-7 | 129 | 155 | No hit | No description |
SMART | SM00355 | 63 | 134 | 154 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MAEMENSSSM TVAGSSLEET ITQQNFPVKK KRNLPGNPDP EAEVIALSPK TLMATNRFVC 60 EICNKGFQRD QNLQLHRRGH NLPWKLRQRT SKEVKKRVYV CPEAMCVHHD PSRALGDLTG 120 IKKHFCRKHG EKKFKCERCT KKYAVQSDWK AHMKTCGTRE YRCDCGTLFS RRDSFITHRA 180 FCDALAQESA RAQPMGITNT EENLKVDEAV TSSSSPPPQP LTPSTGVLSP VLSIQSSELP 240 ADNQNQAGVQ LQAAQGTTPV STTTVTATTI STTASITGPG SSKVFASVFP PSTTLAGHPH 300 SSYSDILCAI GPEQISPIEP MSLSLSSSFY LSANDGSTLF QDHTGHSQHY GSTTQPVLSA 360 TALLQKAAQM GATSSNNSFL RGLGLAMSST SASDNISRVK LENNVELPGL GIQLPSNGPS 420 GRWTDLMMGP SHESMMFGNK PPTLDFLGLG NDANATSSNG FSALLSSMDG GFGVATTSYG 480 GVATRGEAWD GHSDRKPSML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-34 | 130 | 199 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 3e-34 | 130 | 199 | 3 | 72 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016509241.1 | 0.0 | PREDICTED: protein indeterminate-domain 2-like isoform X1 | ||||
Swissprot | Q9LVQ7 | 1e-134 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A1S4D7A7 | 0.0 | A0A1S4D7A7_TOBAC; protein indeterminate-domain 2-like isoform X1 | ||||
STRING | XP_009612196.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-113 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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