PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016507693.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 967aa MW: 108612 Da PI: 6.51

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016507693.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.8	4.7e-41	111	188	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ak+yhrrhkvCe+hsk++ +lvs+l+qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+qa XP_016507693.1 111 MCQVDDCGVDLSNAKDYHRRHKVCEMHSKSSRALVSNLMQRFCQQCSRFHALEEFDEGKRSCRRRLAGHNKRRRKTQA 188 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.6E-33	106	173	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.214	109	186	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.32E-38	110	190	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.0E-30	112	185	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	3.73E-7	684	855	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.9E-4	743	855	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.91E-6	745	855	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 967 aa Download sequence Send to blast
MEARMGGETQ LFKKSLEWDP NDWKWDGDLF IARPKIPSSN YQFFPLETGN SSSSCSDEVN 60 HGEFEKRRRR ETDENVEYDS ASLSLKLGEQ RAHPREFGKR TKLNTTSSRA MCQVDDCGVD 120 LSNAKDYHRR HKVCEMHSKS SRALVSNLMQ RFCQQCSRFH ALEEFDEGKR SCRRRLAGHN 180 KRRRKTQADS GDNNKTLNDV QASGYSLMSL LKILSNIHSN RTNHIEDQNL LSHLLRSLAS 240 QGIPYGDNNL SGLLQASSNL LNNRSPSRNS DIVSLVSNGS RRPPIPKEQH FATTLAAQVP 300 QISSDVHDVR LEDVQTESYQ SPGTSFPIQN SSPAYAQARE SSAGRRNLIN FDLNDVYDGS 360 DDSRENLDRS PLPADRGIGP LECRSWLQQD SQQSSPPSRN SDSASTQSPS SSSSDAQSRT 420 DRIVFKLFGK DPTDFPYVLR AQILDWLSHS PSEIESYIRP GCIVLTVYLR LPESAWEELC 480 CDLSSTLSRL LDVPGNSFWR KGWIYIRVQN QIAFVHDGKL LLDVPLPFET IEHTSILSVK 540 PIAVPVSDRA QFIVKGYNLT KPSTRLLCAL EGNYLVIEAN DEVEHVDGVK KHAELQSINL 600 TCSIPAVSGR GFIEVEDHGL SNGFFPIIIA EEDVCSEICM LESAIELTPA DYVNGLTNNV 660 EVKSQAMDFI HEMGWLLHRN NLKARLGNSN AVLFPLKRFK WLMEFSIDHG WCAVVRKLLN 720 LLLDGTVGGE ENSFLKVSLS EMGLLHKAVR RNSRPLVELL LTYTPEEVAD ELCSEYQSLV 780 GVNGKFLFRP DSVGPAGLTP LHVAAGIDGY EDVLDSLTDD PGMVAIEAWK NKRDSAGFTP 840 EDYARLRGHY SYIHLVQRKI NRVTAKHIVV DIPNNLSDGN SNQKDECATA SFEVSQTERR 900 LIQPCGMCDR KLVYGRQSRS LLYRPVMFSM VALAAVCVCV ALLFKSSPEV LYIFRPFRWE 960 MLDYGSS

Sequence ? help Back to Top

Protein Sequence Length: 967 aa Download sequence Send to blast

MEARMGGETQ LFKKSLEWDP NDWKWDGDLF IARPKIPSSN YQFFPLETGN SSSSCSDEVN  60
HGEFEKRRRR ETDENVEYDS ASLSLKLGEQ RAHPREFGKR TKLNTTSSRA MCQVDDCGVD  120
LSNAKDYHRR HKVCEMHSKS SRALVSNLMQ RFCQQCSRFH ALEEFDEGKR SCRRRLAGHN  180
KRRRKTQADS GDNNKTLNDV QASGYSLMSL LKILSNIHSN RTNHIEDQNL LSHLLRSLAS  240
QGIPYGDNNL SGLLQASSNL LNNRSPSRNS DIVSLVSNGS RRPPIPKEQH FATTLAAQVP  300
QISSDVHDVR LEDVQTESYQ SPGTSFPIQN SSPAYAQARE SSAGRRNLIN FDLNDVYDGS  360
DDSRENLDRS PLPADRGIGP LECRSWLQQD SQQSSPPSRN SDSASTQSPS SSSSDAQSRT  420
DRIVFKLFGK DPTDFPYVLR AQILDWLSHS PSEIESYIRP GCIVLTVYLR LPESAWEELC  480
CDLSSTLSRL LDVPGNSFWR KGWIYIRVQN QIAFVHDGKL LLDVPLPFET IEHTSILSVK  540
PIAVPVSDRA QFIVKGYNLT KPSTRLLCAL EGNYLVIEAN DEVEHVDGVK KHAELQSINL  600
TCSIPAVSGR GFIEVEDHGL SNGFFPIIIA EEDVCSEICM LESAIELTPA DYVNGLTNNV  660
EVKSQAMDFI HEMGWLLHRN NLKARLGNSN AVLFPLKRFK WLMEFSIDHG WCAVVRKLLN  720
LLLDGTVGGE ENSFLKVSLS EMGLLHKAVR RNSRPLVELL LTYTPEEVAD ELCSEYQSLV  780
GVNGKFLFRP DSVGPAGLTP LHVAAGIDGY EDVLDSLTDD PGMVAIEAWK NKRDSAGFTP  840
EDYARLRGHY SYIHLVQRKI NRVTAKHIVV DIPNNLSDGN SNQKDECATA SFEVSQTERR  900
LIQPCGMCDR KLVYGRQSRS LLYRPVMFSM VALAAVCVCV ALLFKSSPEV LYIFRPFRWE  960
MLDYGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-31	111	185	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009773067.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Refseq	XP_016507693.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A1S4D2Y7	0.0	A0A1S4D2Y7_TOBAC; squamosa promoter-binding-like protein 1
TrEMBL	A0A1U7VZ74	0.0	A0A1U7VZ74_NICSY; squamosa promoter-binding-like protein 1
STRING	XP_009773067.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]