PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016507543.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 316aa MW: 35538.8 Da PI: 6.1722 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.6 | 1.3e-14 | 131 | 178 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+r+ ++f L +l+P++ kKl+Ka++L A++YIk+L+ XP_016507543.1 131 QDHVMAERKRRERLTQRFIALSTLIPNL-----KKLDKASVLGDAIKYIKQLE 178 6799************************.....9*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.19 | 128 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-12 | 131 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.7E-18 | 132 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.12E-14 | 133 | 182 | No hit | No description |
SuperFamily | SSF47459 | 2.49E-17 | 133 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-16 | 134 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MDMSSATWWS EMERTNMNDH SFINNNHSQM MTPLNELPFN KPFSSCNYGY SSSPSANTTT 60 VATNHFENLN YTSVKTDQLT SGTTLNFSSS VSTTDCDDFG DSQNLIQALG FGAADITTQK 120 KSYNRTSLQA QDHVMAERKR RERLTQRFIA LSTLIPNLKK LDKASVLGDA IKYIKQLEEQ 180 VKTLEEKAKN CSDESAVAVK RARVLSSYDE YSSSSDENSS ISTDRSFPDI EVRVSDGNFM 240 ISIYCKKQTG IIKEIYNEVE KLHLSIISSS VMPFGYSTTH MTIIAQMDYK LSMTPNHVAN 300 RIRAVMMKEE DTTLTA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-13 | 132 | 187 | 8 | 64 | Transcription factor MYC2 |
5gnj_B | 2e-13 | 132 | 187 | 8 | 64 | Transcription factor MYC2 |
5gnj_E | 2e-13 | 132 | 187 | 8 | 64 | Transcription factor MYC2 |
5gnj_F | 2e-13 | 132 | 187 | 8 | 64 | Transcription factor MYC2 |
5gnj_G | 2e-13 | 132 | 187 | 8 | 64 | Transcription factor MYC2 |
5gnj_I | 2e-13 | 132 | 187 | 8 | 64 | Transcription factor MYC2 |
5gnj_M | 2e-13 | 132 | 187 | 8 | 64 | Transcription factor MYC2 |
5gnj_N | 2e-13 | 132 | 187 | 8 | 64 | Transcription factor MYC2 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 141 | ERKRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016507543.1 | 0.0 | PREDICTED: transcription factor bHLH18-like | ||||
TrEMBL | A0A1S4D2J2 | 0.0 | A0A1S4D2J2_TOBAC; transcription factor bHLH18-like | ||||
STRING | XP_009594425.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4508 | 14 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-46 | bHLH family protein |