PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016507116.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 462aa    MW: 50928.1 Da    PI: 5.4643
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016507116.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573112.42.9e-35147249197
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk......spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                     klfqrlw++eDei lLqG++d+++++g       + + d++afy+++k++ +++++k+qlveK+rrLKkK+++ ++k+ sgke++f+++hd+ +f
  XP_016507116.1 147 KLFQRLWTDEDEIELLQGFLDYTTQRGLnnsstpQHHYDTTAFYDQIKSKFQLDFNKNQLVEKLRRLKKKYRTVMSKMGSGKEFVFKSAHDHATF 241
                     579************************98766444455********************************************************* PP

          DUF573  90 elskkiWg 97 
                     e+s+kiW 
  XP_016507116.1 242 EISRKIWT 249
                     *******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.0E-33149248IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MNQWLCFGKG FSESVVLCLL CGEEHVDIEK PTGIHESAYA LSNLRNWIRH SKVSEISLCR  60
QDHHHHQPVY NDDNLDDDVD VDGDDDSTSS PSLAGEVTIA VSGVGVSPSD SLALYPDLKR  120
RRLDDFTIPV ILPEKKPSAT FDDSQRKLFQ RLWTDEDEIE LLQGFLDYTT QRGLNNSSTP  180
QHHYDTTAFY DQIKSKFQLD FNKNQLVEKL RRLKKKYRTV MSKMGSGKEF VFKSAHDHAT  240
FEISRKIWTN VGSAVRGGAN GVAGAVVLYA PPEDGGLDDD DAHVNPNPYA NDLIDHSPKF  300
NLNSNPNGID IKTPRSRKRS PAASTEAVKV EQQPYQPSGG STTVPLAAEP VSGVAATATA  360
TVAASMPSLI EETVRNCVSP IFKELLNSVA NLNGPSRGLG FGGMGMSPIP LGFGGGAMSM  420
EMMGDEKWRK QQMLELEVYS KRLELVQDQI KAQLEELRSM GS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118122KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755133e-47HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016507116.10.0PREDICTED: uncharacterized protein LOC107824825
TrEMBLA0A1S4D1510.0A0A1S4D151_TOBAC; uncharacterized protein LOC107824825
STRINGXP_009591277.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-75DNA-binding storekeeper protein-related transcriptional regulator