PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016506045.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 231aa MW: 26296.1 Da PI: 9.6984 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 83.3 | 5e-26 | 16 | 106 | 39 | 128 |
NAM 39 iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ P ++++ ++++ek+wyf+ +rd+ky+++ ++nr+t +++Wkatg+dk+++s+ +++ +glkk+ vfy+gra +g ktdW+m e+rl XP_016506045.1 16 FFESTPFRIEELASTGEKKWYFYRPRDHKYRNSAHPNRVTGASFWKATGTDKPIYSSdSTKCIGLKKSSVFYRGRAARGIKTDWMMREFRL 106 677889999877778999**************************************955666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 28.293 | 1 | 126 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.18E-26 | 15 | 111 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-9 | 30 | 106 | IPR003441 | NAC domain |
Pfam | PF16113 | 3.0E-19 | 133 | 196 | IPR032259 | Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type |
Gene3D | G3DSA:3.90.226.10 | 4.2E-9 | 133 | 195 | IPR029045 | ClpP/crotonase-like domain |
SuperFamily | SSF52096 | 8.71E-8 | 133 | 196 | IPR029045 | ClpP/crotonase-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003860 | Molecular Function | 3-hydroxyisobutyryl-CoA hydrolase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MGFGAAFDGN GFCTNFFEST PFRIEELAST GEKKWYFYRP RDHKYRNSAH PNRVTGASFW 60 KATGTDKPIY SSDSTKCIGL KKSSVFYRGR AARGIKTDWM MREFRLPTTN IESAQPKKFL 120 DRNFPANVGP HPAGGDIKQI ATKKQQSDMI EVFTAEYPLI CKIFEYKKPY ISFMDGVTMG 180 FGIGLSGHGR YKLITEVLLY VYGGLLVYAS TSYLHDHCIY IVTRIDHQQV I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-24 | 14 | 106 | 50 | 140 | Stress-induced transcription factor NAC1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 2e-65 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 2e-65 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016506045.1 | 1e-175 | PREDICTED: NAC domain-containing protein 83-like | ||||
TrEMBL | A0A1S4CY05 | 1e-173 | A0A1S4CY05_TOBAC; NAC domain-containing protein 83-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1697 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 3e-45 | NAC domain containing protein 94 |