PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016505307.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 977aa MW: 109781 Da PI: 7.113

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016505307.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.8	3.1e-09	229	289	21	82
trihelix 21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++ + e+ + +yf XP_016505307.1 229 QGRGKTRADKDREVADFLNRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGAEREQ-GSKSYF 289 45788999999**************************************974444.355666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	2.38E-14	806	977	IPR011009	Protein kinase-like domain
CDD	cd00180	9.98E-14	831	977	No hit	No description
Gene3D	G3DSA:1.10.510.10	1.6E-6	850	947	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 977 aa Download sequence Send to blast
MDENKGEITK KQPQQQHLSN SPDDSNQDSP DNTIPQQQQQ QPPQTVISGA PYISSSLYNI 60 PGGAATTSVS FEQQQQQQQQ FEVVNPKRPR YTASQWKFIP SSSSQQQQQQ KPASQVNILS 120 TESSPISPSP QAAATNPQTQ AASSSDTTSS PSHSPRPSAS GQETSKGEGG EQVHQQHQQF 180 RKGKYVSPVW KPNEMLWLAR AWKIQYQGGS SELHLEGSQE MSTGAGVQQG RGKTRADKDR 240 EVADFLNRHG VNRDAKTAGT KWDNMLGEFR KVYEWERGAE REQGSKSYFR LSPYERKMNR 300 LPASFDEEVF EELSQFMGPR MRSPQTRGGV GFGTQANLIV SLSDTVTKSL PPPPPFREDD 360 LPLSARAKQL AIPISGTEAL LHGTRGVFLG YDTTTSSLDI GGPSSSASSK ELRRIGKIRM 420 IWEESVSLWA EEGEHHRGRV KLQGTSFLNA DEIAFLDDST VACTMEAFED GPMKGFSVDR 480 FLSGVQLKVF GRRKSSSAPA PCGPNERLQL PSSEFPIRST TPWEFQDPTE YYVGCLRSPP 540 PALPSLFELS WHLQQPPPEE LRFPLRRDVF KDLPQGKELF FTTSTELLDC RGITYEVLSS 600 IMRPNPSLST ATDRDSYIGL WDDCINMIIS KFCSIEMVFV RKSNSSFSLA ETVQDRWPNV 660 TAFLRNFCLW RGEETGQPSE GQLDPSSSIV EKLLWTYMDL PYVLGYYAVG FIVTFCALSR 720 SQDRIIRTDL YTVDLSTPVE RLKALVPCWR IAGLLPLLAD RCFHYMSSNG SNLKHLPYTD 780 FERIDLGNGN YVEMTPNTVV RYFSSKRKWV AVKEIYDFLD HRIPHAEFVF RASEKDLALV 840 FKPRGCKFKP ANCDQLIEAL KQITKALVAL HDLSFMHRDL GWDKVMRRSD RENEWFITGF 900 DEAVSSPQLY PYGGAAAAAT ASGRHPPEMV RNYHNVKVDV WGIGQLVKSC GLVGVPKLLR 960 ELQNRCLDQN PEQRPTA

Sequence ? help Back to Top

Protein Sequence Length: 977 aa Download sequence Send to blast

MDENKGEITK KQPQQQHLSN SPDDSNQDSP DNTIPQQQQQ QPPQTVISGA PYISSSLYNI  60
PGGAATTSVS FEQQQQQQQQ FEVVNPKRPR YTASQWKFIP SSSSQQQQQQ KPASQVNILS  120
TESSPISPSP QAAATNPQTQ AASSSDTTSS PSHSPRPSAS GQETSKGEGG EQVHQQHQQF  180
RKGKYVSPVW KPNEMLWLAR AWKIQYQGGS SELHLEGSQE MSTGAGVQQG RGKTRADKDR  240
EVADFLNRHG VNRDAKTAGT KWDNMLGEFR KVYEWERGAE REQGSKSYFR LSPYERKMNR  300
LPASFDEEVF EELSQFMGPR MRSPQTRGGV GFGTQANLIV SLSDTVTKSL PPPPPFREDD  360
LPLSARAKQL AIPISGTEAL LHGTRGVFLG YDTTTSSLDI GGPSSSASSK ELRRIGKIRM  420
IWEESVSLWA EEGEHHRGRV KLQGTSFLNA DEIAFLDDST VACTMEAFED GPMKGFSVDR  480
FLSGVQLKVF GRRKSSSAPA PCGPNERLQL PSSEFPIRST TPWEFQDPTE YYVGCLRSPP  540
PALPSLFELS WHLQQPPPEE LRFPLRRDVF KDLPQGKELF FTTSTELLDC RGITYEVLSS  600
IMRPNPSLST ATDRDSYIGL WDDCINMIIS KFCSIEMVFV RKSNSSFSLA ETVQDRWPNV  660
TAFLRNFCLW RGEETGQPSE GQLDPSSSIV EKLLWTYMDL PYVLGYYAVG FIVTFCALSR  720
SQDRIIRTDL YTVDLSTPVE RLKALVPCWR IAGLLPLLAD RCFHYMSSNG SNLKHLPYTD  780
FERIDLGNGN YVEMTPNTVV RYFSSKRKWV AVKEIYDFLD HRIPHAEFVF RASEKDLALV  840
FKPRGCKFKP ANCDQLIEAL KQITKALVAL HDLSFMHRDL GWDKVMRRSD RENEWFITGF  900
DEAVSSPQLY PYGGAAAAAT ASGRHPPEMV RNYHNVKVDV WGIGQLVKSC GLVGVPKLLR  960
ELQNRCLDQN PEQRPTA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009775235.1	0.0	PREDICTED: uncharacterized protein LOC104225161
TrEMBL	A0A1U7WLU2	0.0	A0A1U7WLU2_NICSY; uncharacterized protein LOC104225161
STRING	XP_009775235.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12936	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	3e-08	Trihelix family protein