PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016504690.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 524aa    MW: 59248.3 Da    PI: 8.0029
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016504690.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.8e-1727118199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                     ffkv+   d + +++l++p  fa++ ++   ++++  led+sg++W+v++  +++ g+  +++GW +F +++gL+ gDf+vF+++ + + f   v
  XP_016504690.1  27 FFKVM--IDKSFHKILYFPPMFAQSVSHL--TDRETYLEDSSGQRWRVTI--CNHEGSLAIRQGWPKFSSEHGLNLGDFLVFYYVVEvQYF--IV 113
                     89999..88999999********999755..5668***************..*******************************99754555..99 PP

                     EEE-S CS
              B3  95 kvfrk 99 
                     ++++k
  XP_016504690.1 114 QIYDK 118
                     98887 PP
2B331.43.3e-104425171492
                     T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     + l lp +  +++  ++ k e   + l+ ++ + W + +   ++ g  vlt+GWk F+ a gL+ gD ++F+l++  + e+
  XP_016504690.1 442 DFLELPESW-RKYlmKKAKLERWIIFLRGPDKKIWPIIY--HRRAGVDVLTNGWKTFAAAYGLNRGDDCLFELEN--QLEC 517
                     556666665.3665544455667799999**********..9999999************************865..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-1724121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-1924121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.92925119IPR003340B3 DNA binding domain
CDDcd100172.67E-1726117No hitNo description
SMARTSM010193.7E-1027119IPR003340B3 DNA binding domain
PfamPF023624.1E-1527118IPR003340B3 DNA binding domain
PROSITE profilePS5086310.32429524IPR003340B3 DNA binding domain
SMARTSM010190.0097434522IPR003340B3 DNA binding domain
CDDcd100173.93E-10438513No hitNo description
PfamPF023622.5E-7441516IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-11442515IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-12442517IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MACEKEASDV YCKQNGLLFH GKRVSSFFKV MIDKSFHKIL YFPPMFAQSV SHLTDRETYL  60
EDSSGQRWRV TICNHEGSLA IRQGWPKFSS EHGLNLGDFL VFYYVVEVQY FIVQIYDKSG  120
CQKIKFYSDS GKGKRKTRTY PEATSQVKLL QTTDINPANK RSKISAVSES KKVPCKTHIK  180
KFATNIDADT GKGQLVYPAV YVDESFCMID RDAQYHQGDD RLCLHLSSFE MPASKPLAEG  240
TSSLLKADGG NSIHVETNLR SQTEPNLVVV ADYLNSEELL PKFEAEITGT DMVPAKDIPL  300
LSQKDQNDCP SGIISSSFLK PAANINKNDG VSNVTKYQNH WMSTDTKSMM LQSDNKDGRC  360
TGSNQITREK SNEASWFARE TRLVKKEYEE TAAEAYYPAR AISGKEPANG EKVIKSEPAD  420
SGDMPSLKAV SYSCLLEVDG RDFLELPESW RKYLMKKAKL ERWIIFLRGP DKKIWPIIYH  480
RRAGVDVLTN GWKTFAAAYG LNRGDDCLFE LENQLECIFA VRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775871.10.0PREDICTED: uncharacterized protein LOC104225716 isoform X1
RefseqXP_016504690.10.0PREDICTED: uncharacterized protein LOC107822650 isoform X1
TrEMBLA0A1S4CU910.0A0A1S4CU91_TOBAC; uncharacterized protein LOC107822650 isoform X1
TrEMBLA0A1U7WF460.0A0A1U7WF46_NICSY; uncharacterized protein LOC104225716 isoform X1
STRINGXP_009775871.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.18e-10B3 family protein