PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016501836.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 274aa    MW: 29972.1 Da    PI: 4.372
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016501836.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-062850427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                    ++C f++   +C+ G+rC+F+Hgp
  XP_016501836.1 28 VPCYFYFN-SYCNKGERCSFMHGP 50
                    68******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6012451IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.43E-52449IPR000571Zinc finger, CCCH-type
SMARTSM003560.00932550IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-52952IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
PLESRAETSS ESAPPHSKTA VPVNKTNVPC YFYFNSYCNK GERCSFMHGP DDGTTAWRSS  60
KIASGVPDGP TAEKKTSAGS ETGPASAQKH SNSSETGSKA AAHEYIKSKV DLHSMSNNVG  120
EESASRETSA SPSEEATAVR LNSLVPAEGF AQGGSDLSPN GSSDEEVEDN AEREEWLESS  180
PGFDILVDDR VEGLSHEDNH SYLLQHDKEL DERFAGYDFV DNLEYDPAYP DMRIVSDEEL  240
DNSYYNNVEN HEVNEYAREI VISAHGRKSV PHKC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016501836.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like, partial
TrEMBLA0A1S4CLB50.0A0A1S4CLB5_TOBAC; zinc finger CCCH domain-containing protein 34-like
STRINGXP_009589189.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11433911