PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016499796.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 378aa MW: 43060.6 Da PI: 9.197 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.9 | 4.2e-32 | 77 | 130 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH rF++ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ XP_016499796.1 77 PRLRWTPELHLRFIHAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 130 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.249 | 73 | 133 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-30 | 73 | 131 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.24E-16 | 74 | 132 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.4E-23 | 77 | 132 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.4E-10 | 78 | 129 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MKRGSSAEDS KSSPKNQIEF EEEEEEEEEK EDDLETEENS KLPEGTRTSS SNSTVEENGK 60 KSTNSGGVRQ YVRSKTPRLR WTPELHLRFI HAVERLGGQD RATPKLVLQL MNIKGLSIAH 120 VKSHLQMYRS KKTDDPNQIS TDGRFLIENG DHHIFNLSQL PRLQGTFNQT SSSSLRYEDS 180 LWNRQANSSM YNPYNINIGG ASRINTRHGF SSHINNGHSQ GQLFPWNKTL QIEKKPQHFH 240 NQRFWSTQIG TSSTKQNLLM TLPIDRDRDR GRDQEIMKTQ MRTNNSLSLR GKGWTTEAGT 300 ITTSAPSKRK IQDLEVNLDL NLSLKITRED DDDHKKRLKA EEVGNLLSLS LFSSSATSMD 360 DKENNGGEKN TRMTSTQI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-16 | 78 | 132 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-16 | 78 | 132 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 7e-17 | 78 | 132 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-17 | 78 | 132 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-17 | 78 | 132 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-17 | 78 | 132 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-16 | 78 | 132 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-16 | 78 | 132 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-16 | 78 | 132 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-16 | 78 | 132 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-16 | 78 | 132 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-16 | 78 | 132 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00301 | DAP | Transfer from AT2G40260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016499796.1 | 0.0 | PREDICTED: uncharacterized protein LOC107818319 | ||||
TrEMBL | A0A1S4CFA3 | 0.0 | A0A1S4CFA3_TOBAC; uncharacterized protein LOC107818319 | ||||
STRING | XP_009791663.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8573 | 21 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 4e-48 | G2-like family protein |