PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016498962.1

Common Name

NtabSPL9a, SPL9

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 310aa MW: 32962 Da PI: 8.6724

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016498962.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	46.8	7.9e-15	55	84	47	76
SSEEETTT--SS--S-STTTT-------S- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkk 76 + fh+l efD++krsCrrrLa+hnerrrk+ XP_016498962.1 55 TGFHRLPEFDQGKRSCRRRLAGHNERRRKP 84 67**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	11.511	7	84	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.51E-12	54	88	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.9E-8	56	83	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MNGLGRSEME LLASASASSS TSTTSTSPDS PPNTLKFGQK IYFEHVGPQH LKSATGFHRL 60 PEFDQGKRSC RRRLAGHNER RRKPPPGSLL SNRYGSLSSS IFENNGRSGS FLVDFTAYPN 120 LTGGAWPNTR SSDRGWDNQS TASGKLLQSH WLNGSENPTS DLVLQGSVAR GANYSGPGII 180 PSGNCFSGVS DSSGALSLLS NESWGSRNQS SSLGVNGLVN TDGGHTVQPS GSHAAPVNHY 240 SGSLWGFKGN EASSSSHAIP PDLGLGHISQ LAVNQYSAEL GMAQHSGRQY MELEHSKGYD 300 SSVQNVHWTL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LC073298	0.0	LC073298.1 Nicotiana tabacum NtabSPL9a mRNA for squamosa promoter binding protein NtabSPL9a, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016498962.1	0.0	PREDICTED: squamosa promoter-binding-like protein 9
TrEMBL	A0A1S4CCM5	0.0	A0A1S4CCM5_TOBAC; squamosa promoter-binding-like protein 9
STRING	XP_009792000.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4571	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	1e-29	squamosa promoter binding protein-like 9

Publications ? help Back to Top
Zhang T,Wang J,Zhou C The role of miR156 in developmental transitions in Nicotiana tabacum. Sci China Life Sci, 2015. 58(3): p. 253-60 [PMID:25682394] Han YY,Ma YQ,Li DZ,Yao JW,Xu ZQ Characterization and phylogenetic analysis of fifteen NtabSPL genes in Nicotiana tabacum L. cv. Qinyan95. Dev. Genes Evol., 2016. 226(1): p. 1-14 [PMID:26635304]