PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016497518.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 523aa MW: 58639.4 Da PI: 5.3856 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.2 | 3.1e-16 | 231 | 290 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++t+e+Aa+a++ a++k++g XP_016497518.1 231 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDTEEKAARAYDLAALKYWG 290 78*******************655454478446*************************98 PP | |||||||
2 | AP2 | 46.6 | 8.4e-15 | 335 | 384 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_016497518.1 335 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 384 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.1E-13 | 231 | 290 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-17 | 231 | 300 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.71E-23 | 231 | 298 | No hit | No description |
PROSITE profile | PS51032 | 19.704 | 232 | 298 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-29 | 232 | 304 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-16 | 232 | 299 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-7 | 233 | 244 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.64E-24 | 333 | 394 | No hit | No description |
SuperFamily | SSF54171 | 1.37E-17 | 333 | 393 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.2E-34 | 334 | 398 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-18 | 334 | 393 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 334 | 392 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-9 | 335 | 384 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-7 | 374 | 394 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MSTWLGFSLS ADFNIGDDEE EEEEEVIKDY QSRNENQATG NDANLVEETP LSVMPSHYPF 60 PRCDTTTEDC WRYENHEMTS ATNLDEEGPK LEDFLGCCYS NSPPDHEQQI AEINVNIPPT 120 INPSDHEQQF QVMVPNGSFQ SSNEFTNSTT GSVYHLPFDG ATSVSGFKSW LRQSAAAAPL 180 ISSAEENRTN NCQTLSLAAA PKKRPVAVKN VTGSREPVPR KSIDTFGQRT SQYRGVTRHR 240 WTGRYEAHLW DNSCRKEGQT RKGRQVYLGG YDTEEKAARA YDLAALKYWG ATTHINFPLN 300 TYEKELEEMK NMNRQEFVAH LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL 360 YLGTFSTQEE AAEAYDIAAI KFRGTSAVTN FDSSRYDVKR ICSSTTLIAS DLAKRSPSKD 420 SGVSPSSFED YNNSCTSSPQ PILAITNGEQ LQQQPADNSF MDISNSRSSG SRSAEMSCDF 480 GVGLEYPQFE DGRKRIDDNT QSLGRIGNMD LVHPVPMFAL WNQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016497518.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q1PFE1 | 1e-136 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A1S4C8Q9 | 0.0 | A0A1S4C8Q9_TOBAC; AP2-like ethylene-responsive transcription factor AIL1 | ||||
STRING | XP_009600027.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8777 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-129 | AP2 family protein |
Publications ? help Back to Top | |||
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