PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016497518.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 523aa    MW: 58639.4 Da    PI: 5.3856
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016497518.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.1e-16231290155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++t+e+Aa+a++ a++k++g
  XP_016497518.1 231 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDTEEKAARAYDLAALKYWG 290
                     78*******************655454478446*************************98 PP
2AP246.68.4e-15335384355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_016497518.1 335 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 384
                     9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.1E-13231290IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-17231300IPR016177DNA-binding domain
CDDcd000189.71E-23231298No hitNo description
PROSITE profilePS5103219.704232298IPR001471AP2/ERF domain
SMARTSM003803.5E-29232304IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-16232299IPR001471AP2/ERF domain
PRINTSPR003678.1E-7233244IPR001471AP2/ERF domain
CDDcd000181.64E-24333394No hitNo description
SuperFamilySSF541711.37E-17333393IPR016177DNA-binding domain
SMARTSM003806.2E-34334398IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-18334393IPR001471AP2/ERF domain
PROSITE profilePS5103219.137334392IPR001471AP2/ERF domain
PfamPF008471.6E-9335384IPR001471AP2/ERF domain
PRINTSPR003678.1E-7374394IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MSTWLGFSLS ADFNIGDDEE EEEEEVIKDY QSRNENQATG NDANLVEETP LSVMPSHYPF  60
PRCDTTTEDC WRYENHEMTS ATNLDEEGPK LEDFLGCCYS NSPPDHEQQI AEINVNIPPT  120
INPSDHEQQF QVMVPNGSFQ SSNEFTNSTT GSVYHLPFDG ATSVSGFKSW LRQSAAAAPL  180
ISSAEENRTN NCQTLSLAAA PKKRPVAVKN VTGSREPVPR KSIDTFGQRT SQYRGVTRHR  240
WTGRYEAHLW DNSCRKEGQT RKGRQVYLGG YDTEEKAARA YDLAALKYWG ATTHINFPLN  300
TYEKELEEMK NMNRQEFVAH LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL  360
YLGTFSTQEE AAEAYDIAAI KFRGTSAVTN FDSSRYDVKR ICSSTTLIAS DLAKRSPSKD  420
SGVSPSSFED YNNSCTSSPQ PILAITNGEQ LQQQPADNSF MDISNSRSSG SRSAEMSCDF  480
GVGLEYPQFE DGRKRIDDNT QSLGRIGNMD LVHPVPMFAL WNQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016497518.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-136AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1S4C8Q90.0A0A1S4C8Q9_TOBAC; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_009600027.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-129AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]