PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016494312.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 185aa MW: 21233.4 Da PI: 10.3818

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016494312.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.2	3.4e-16	16	56	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +ien+ +qvtfskRrng++KKA+EL +++aev +i+ + XP_016494312.1 16 KIENQNIQQVTFSKRRNGVFKKANELVAMTGAEVGIIVCPQ 56 79***********************************9755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.469	7	67	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.2E-18	7	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-13	9	29	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.79E-20	9	77	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.5E-18	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-13	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-13	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MSTRRIKVRK SVRLAKIENQ NIQQVTFSKR RNGVFKKANE LVAMTGAEVG IIVCPQGSKP 60 YSFGHPNVNE IINKYVGEKR SPSPSSPGID DKYVQMFRKA NSRELNTRLN SLQDQLDFAL 120 NMKSKLKQMN KKVESQQEWF KGPIEKMNYI EASMLKEGLE DLLLKVKNYG TEHGYGYENG 180 KWKAE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016494312.1	1e-135	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A1S4BZH9	1e-134	A0A1S4BZH9_TOBAC; agamous-like MADS-box protein AGL62
STRING	XP_009599455.1	1e-133	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3829	4	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	3e-26	AGAMOUS-like 62