PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016493747.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 165aa MW: 18795.7 Da PI: 9.8824 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32.1 | 1.5e-10 | 18 | 55 | 4 | 41 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 ++k+ ++ +s+ +n + K A LS+LC++++a+iifs XP_016493747.1 18 KDKRAEKIALSNKQNALSKRAMDLSTLCGIDIAIIIFS 55 7889999******************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0031 | 1 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.923 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-5 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.05E-13 | 10 | 81 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-9 | 18 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-5 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-5 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MARMTSQMKS KSDKKILKDK RAEKIALSNK QNALSKRAMD LSTLCGIDIA IIIFSIAAEP 60 FFFGNPNVES VVERFSQAKQ PFYHMSSRKT THEKTGGGKE NDTMKKEKRK AINEEEKGES 120 TLEIFEPTTL VRLEKLKQEI DQLEKDLAEK IDELQSKIGV KDPKF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016493747.1 | 1e-117 | PREDICTED: agamous-like MADS-box protein AGL29, partial | ||||
TrEMBL | A0A1S4BXW9 | 1e-115 | A0A1S4BXW9_TOBAC; agamous-like MADS-box protein AGL29 | ||||
STRING | XP_009772696.1 | 1e-114 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2297 | 12 | 58 |