PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016492779.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 262aa    MW: 30194.2 Da    PI: 5.5931
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016492779.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.4e-08144189555
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +++ r+RR++i ++ +eL +l+P         +++ ae+L+ + +Y+k Lq
  XP_016492779.1 144 QSIAARQRRKKITEKTQELGKLIPGgH------RMNTAEMLQATFKYVKFLQ 189
                     67889*******************955......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.4E-12136195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-12136197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-10137192No hitNo description
PROSITE profilePS5088812.862139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5144189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-9145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MASLSYNSNS NLEPNMQQLN EFLFDFNYDQ SFPKPEACYF DPFFDSSDFV FPAILMEPNC  60
IVPEIQEYYS DFQMSNPKRQ KVFQLDNCHH QDIITHEGNL SNGPIYQSFS FPENIPMPQL  120
EFPSPPVFNS GCCHEKKEKK MSAQSIAARQ RRKKITEKTQ ELGKLIPGGH RMNTAEMLQA  180
TFKYVKFLQA QVGLLEFIGS HQENGKSYET PDLQKLVGSP LIQEKLYSSD NCLVPKVFLE  240
DLDKNHEFQH SQSVDQVKKL IT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771681.10.0PREDICTED: transcription factor bHLH53 isoform X2
RefseqXP_016492779.10.0PREDICTED: transcription factor bHLH53-like
TrEMBLA0A1S4BV810.0A0A1S4BV81_TOBAC; transcription factor bHLH53-like
TrEMBLA0A1U7W3920.0A0A1U7W392_NICSY; transcription factor bHLH53 isoform X2
STRINGXP_009771680.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-24bHLH family protein