PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016492611.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 533aa MW: 60536.9 Da PI: 8.0226

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016492611.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.7	9.2e-14	28	107	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+e+A+ GF ++k++s+k+ + i ++ C + k+++++ +++r +C+a+++ +e++g w++++++++HnH+l p XP_016492611.1 28 DFYKEHARLPGFCIVKRTSNKK-VGDIISYVQYGCDTSRKPRNKH----------VTKRRNCRARINRILEENGSWRISNVVKKHNHQLEP 107 6**************99997.677799999988777654..........56999**************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-10	28	107	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.7E-27	227	319	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MPNEFNEEDL IIGPITGMRF SSKDVMFDFY KEHARLPGFC IVKRTSNKKV GDIISYVQYG 60 CDTSRKPRNK HVTKRRNCRA RINRILEENG SWRISNVVKK HNHQLEPALS RLMVGHRSLS 120 KSLKRTLAVK DIAGLRPSKN IRVAEVLVGG PENLGCTPKD CRNYILKSKK LQLQEGDAQS 180 LLKFFSDMQQ NDREFYCSVD VDSFGQFRNV VWVHSHSKVA YEEFHDVICL DTTYLVNRYN 240 MPFASFAGVN QYRQSILLGC ALMSSEDITS YKMVLSTWLG AQNNVHPLAI MTDQCDSIKA 300 VINALMPNTV HRYCIWHIFA KLPTKLSRVL DDKIAKAEFK ALVLDSINIA IGAKFEKELE 360 AEYEPRCFEP KCLSEFAWEE KFQTCYTREV FEFFQVQLRK LYHCEISTPE DHQATVGVEN 420 YIIADYSFRS FNTRDPFVFT VEYTPIGEYL SCNCKWFEIR GDGSGVRGNM RGRGGGRGVD 480 RGGGRSGSRG GGRGGGKTGL AEGIEQDDAT VPPHSSLPDL NDEANWEIED LTV

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MPNEFNEEDL IIGPITGMRF SSKDVMFDFY KEHARLPGFC IVKRTSNKKV GDIISYVQYG  60
CDTSRKPRNK HVTKRRNCRA RINRILEENG SWRISNVVKK HNHQLEPALS RLMVGHRSLS  120
KSLKRTLAVK DIAGLRPSKN IRVAEVLVGG PENLGCTPKD CRNYILKSKK LQLQEGDAQS  180
LLKFFSDMQQ NDREFYCSVD VDSFGQFRNV VWVHSHSKVA YEEFHDVICL DTTYLVNRYN  240
MPFASFAGVN QYRQSILLGC ALMSSEDITS YKMVLSTWLG AQNNVHPLAI MTDQCDSIKA  300
VINALMPNTV HRYCIWHIFA KLPTKLSRVL DDKIAKAEFK ALVLDSINIA IGAKFEKELE  360
AEYEPRCFEP KCLSEFAWEE KFQTCYTREV FEFFQVQLRK LYHCEISTPE DHQATVGVEN  420
YIIADYSFRS FNTRDPFVFT VEYTPIGEYL SCNCKWFEIR GDGSGVRGNM RGRGGGRGVD  480
RGGGRSGSRG GGRGGGKTGL AEGIEQDDAT VPPHSSLPDL NDEANWEIED LTV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	488	496	RGGGRGGGK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016492611.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A1S4BUQ9	0.0	A0A1S4BUQ9_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_009797803.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1301	9	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	8e-49	FAR1 family protein