PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016484692.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 390aa    MW: 45887.6 Da    PI: 8.7812
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016484692.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR188.97.1e-2824113191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     ++Yn+YA ++GFsvrk++ +ksk +g +t+r+f C+keg+re++k++    +++r+e rtgC a+++v+++++gk+ ++++e++HnH+l+p
  XP_016484692.1  24 EYYNKYAATIGFSVRKEYANKSKVHGYVTSRKFICYKEGYRERDKRE-AMVKKPRKEIRTGCLAHMVVSRQSNGKFSIISFEKKHNHPLVP 113
                     69*****************************************9999.9999************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-2524113IPR004330FAR1 DNA binding domain
PfamPF105512.9E-10200255IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDVSHLFEPI KLGMAFDSEE YAYEYYNKYA ATIGFSVRKE YANKSKVHGY VTSRKFICYK  60
EGYRERDKRE AMVKKPRKEI RTGCLAHMVV SRQSNGKFSI ISFEKKHNHP LVPPSLAHML  120
PSQRNIKLSQ AYEIDLLDDS GICPKSSFDY ASRLAGGKAS LGYTKWDHIN YLRDKRKESL  180
KQGVAHSLVD YFEKRIYGNV VSFDITYRTN KEYRPLALFV GLNNHREMVV FGAALLYDEI  240
AEAFEWLFTI FFRAIKLLYY YEYGDDFLNA WEEMLEKYDV KDNSWLENTF AIRKKWSMTY  300
GKNLFKHFQR AIDDKRANEN KSNFDMTKRI SVLNVKLPLL IHAREIYTAT IFDLFEKEWE  360
KSLLISINGF HDEEEFVNTM LALMEVADSM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016484692.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 12-like
TrEMBLA0A1S4B7690.0A0A1S4B769_TOBAC; protein FAR1-RELATED SEQUENCE 12-like
STRINGXP_009619707.11e-126(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30211740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-38FAR1-related sequence 5