PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016483505.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 368aa MW: 42120 Da PI: 4.6842 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.2 | 2.9e-15 | 134 | 218 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e+ L+ea ++ r +r++l+ W+ev++k+ + ++er+ +qC+++++ l+k+ykk+k ++ +++s +++yf++++ XP_016483505.1 134 WSEHETFILLEAWGDRFVRHGRKSLRSDEWQEVAEKVsQGSKLERTDTQCRNRLDTLKKKYKKEKMKFAENGCNTS-KWVYFKKMD 218 *************************************555689************************999988887.9*******8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.365 | 132 | 191 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.0E-20 | 133 | 220 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-5 | 133 | 199 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 368 aa Download sequence Send to blast |
MDDNEDNGRY PPSPYGMNQG YGSSNRQKLP VRDTSYSRHV DDQYVEEADN DEDVDDEEEE 60 DDDDDENGVQ RIGKDVFEDD DDDDYGDSQR HQKKRKLKSL LSSYEFAPRV PPPSTAAPTA 120 PKPSFGGRNP LSDWSEHETF ILLEAWGDRF VRHGRKSLRS DEWQEVAEKV SQGSKLERTD 180 TQCRNRLDTL KKKYKKEKMK FAENGCNTSK WVYFKKMDML LTSTPQLAGV SCGVDSGEYV 240 FMSSKVSLNR ANGLDEMRDS PNNSGSADGD DDDSEDLPPK RSRNGQSRGN GASFKLIADS 300 IHKFSEIYVK IENSKRQQML ELEKMRMDFH RDLEMQKRQI VERAHAEIAR IRQGRDEEND 360 ISAENVSG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016483505.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL1-like | ||||
TrEMBL | A0A1S4B3K3 | 0.0 | A0A1S4B3K3_TOBAC; trihelix transcription factor ASIL1-like | ||||
STRING | XP_009609888.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7230 | 24 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24490.1 | 8e-67 | Trihelix family protein |