PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016482352.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 203aa MW: 23485.1 Da PI: 7.8766 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87 | 1.7e-27 | 118 | 176 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk++++ r+YY+C+s gC+vkk++er+ +d +++++tYeg+Hnhe XP_016482352.1 118 LDDGYKWRKYGKKKVKSNTNLRNYYKCSSGGCKVKKRIERDGHDSSYLITTYEGRHNHE 176 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-29 | 106 | 177 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-24 | 111 | 176 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.496 | 113 | 178 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-29 | 118 | 177 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-21 | 119 | 176 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MNSTFLETSI SQTGNPSFTS PFLYSYMTQD CGYNFQDCDF NNCQDFESSS FLDQLLVDYS 60 PTNNNFNTSL SENPILQESS TNINHLREKS KGGIKKEKMN ERHINAVVFR TKTQLEILDD 120 GYKWRKYGKK KVKSNTNLRN YYKCSSGGCK VKKRIERDGH DSSYLITTYE GRHNHESFSI 180 IYNNEIPLSF LNEWTLQAIP NGV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-24 | 107 | 176 | 3 | 72 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 3e-33 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009763636.1 | 1e-151 | PREDICTED: probable WRKY transcription factor 51 | ||||
Refseq | XP_016482352.1 | 1e-151 | PREDICTED: probable WRKY transcription factor 51 | ||||
Swissprot | Q93WU9 | 8e-38 | WRK51_ARATH; Probable WRKY transcription factor 51 | ||||
TrEMBL | A0A1S4B088 | 1e-149 | A0A1S4B088_TOBAC; probable WRKY transcription factor 51 | ||||
TrEMBL | A0A1U7VFG7 | 1e-149 | A0A1U7VFG7_NICSY; probable WRKY transcription factor 51 | ||||
STRING | XP_009763636.1 | 1e-150 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14192 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 2e-28 | WRKY DNA-binding protein 51 |
Publications ? help Back to Top | |||
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