PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016482352.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 203aa    MW: 23485.1 Da    PI: 7.8766
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016482352.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY871.7e-27118176159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYG+K+vk++++ r+YY+C+s gC+vkk++er+ +d +++++tYeg+Hnhe
  XP_016482352.1 118 LDDGYKWRKYGKKKVKSNTNLRNYYKCSSGGCKVKKRIERDGHDSSYLITTYEGRHNHE 176
                     59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-29106177IPR003657WRKY domain
SuperFamilySSF1182901.31E-24111176IPR003657WRKY domain
PROSITE profilePS5081127.496113178IPR003657WRKY domain
SMARTSM007742.2E-29118177IPR003657WRKY domain
PfamPF031061.8E-21119176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MNSTFLETSI SQTGNPSFTS PFLYSYMTQD CGYNFQDCDF NNCQDFESSS FLDQLLVDYS  60
PTNNNFNTSL SENPILQESS TNINHLREKS KGGIKKEKMN ERHINAVVFR TKTQLEILDD  120
GYKWRKYGKK KVKSNTNLRN YYKCSSGGCK VKKRIERDGH DSSYLITTYE GRHNHESFSI  180
IYNNEIPLSF LNEWTLQAIP NGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-24107176372WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754513e-33HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763636.11e-151PREDICTED: probable WRKY transcription factor 51
RefseqXP_016482352.11e-151PREDICTED: probable WRKY transcription factor 51
SwissprotQ93WU98e-38WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBLA0A1S4B0881e-149A0A1S4B088_TOBAC; probable WRKY transcription factor 51
TrEMBLA0A1U7VFG71e-149A0A1U7VFG7_NICSY; probable WRKY transcription factor 51
STRINGXP_009763636.11e-150(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA141921013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-28WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Yan C, et al.
    Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis.
    Mol. Cell, 2018. 70(1): p. 136-149.e7
    [PMID:29625034]