PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016482352.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 203aa MW: 23485.1 Da PI: 7.8766

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016482352.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87	1.7e-27	118	176	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk++++ r+YY+C+s gC+vkk++er+ +d +++++tYeg+Hnhe XP_016482352.1 118 LDDGYKWRKYGKKKVKSNTNLRNYYKCSSGGCKVKKRIERDGHDSSYLITTYEGRHNHE 176 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.8E-29	106	177	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-24	111	176	IPR003657	WRKY domain
PROSITE profile	PS50811	27.496	113	178	IPR003657	WRKY domain
SMART	SM00774	2.2E-29	118	177	IPR003657	WRKY domain
Pfam	PF03106	1.8E-21	119	176	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MNSTFLETSI SQTGNPSFTS PFLYSYMTQD CGYNFQDCDF NNCQDFESSS FLDQLLVDYS 60 PTNNNFNTSL SENPILQESS TNINHLREKS KGGIKKEKMN ERHINAVVFR TKTQLEILDD 120 GYKWRKYGKK KVKSNTNLRN YYKCSSGGCK VKKRIERDGH DSSYLITTYE GRHNHESFSI 180 IYNNEIPLSF LNEWTLQAIP NGV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-24	107	176	3	72	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	3e-33	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009763636.1	1e-151	PREDICTED: probable WRKY transcription factor 51
Refseq	XP_016482352.1	1e-151	PREDICTED: probable WRKY transcription factor 51
Swissprot	Q93WU9	8e-38	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A1S4B088	1e-149	A0A1S4B088_TOBAC; probable WRKY transcription factor 51
TrEMBL	A0A1U7VFG7	1e-149	A0A1U7VFG7_NICSY; probable WRKY transcription factor 51
STRING	XP_009763636.1	1e-150	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14192	10	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	2e-28	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]