PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016482077.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 300aa MW: 32822.1 Da PI: 9.8883 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.9 | 1.5e-10 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ ++ ++G+g W+tI + R+ ++k++w++ XP_016482077.1 5 KQKWTSEEEAALKAGILKHGPGKWRTILKDPEfsgvlCLRSNVDLKDKWRNM 56 79***********************************66***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.941 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.18E-15 | 2 | 74 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-13 | 4 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-7 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.12E-18 | 6 | 57 | No hit | No description |
PROSITE profile | PS51504 | 24.214 | 114 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
SMART | SM00526 | 3.9E-13 | 118 | 183 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 2.5E-16 | 119 | 196 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.0E-15 | 119 | 193 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 7.3E-8 | 125 | 181 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MGAPKQKWTS EEEAALKAGI LKHGPGKWRT ILKDPEFSGV LCLRSNVDLK DKWRNMTVMA 60 NGWSSREQAR LAVKRTKQAP RQDGSPVADT TTAESDEEAA EAQAATTSSS SPQIHGSRKS 120 MIRLDNLIME AISSLKEPGG SNKTAIAAYI EDQYWAPPNF IRLLSGKLKY LTATGKLIKI 180 KRKYRVAPTS TPSDRRRNLS SPFLDSRQRI FSKVDRDDMD MLSTSQIDLE LANKMRNMTP 240 QEAAAAAAQA VAEAESAIAE AEEAARDAEA AEADAEAAKA FSDATKTLHG RSAPRMMIRA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 1e-110 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009606064.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like isoform X1 | ||||
Refseq | XP_009606065.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like isoform X1 | ||||
Refseq | XP_009606066.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like isoform X1 | ||||
Refseq | XP_016482077.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like isoform X1 | ||||
Refseq | XP_016482078.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like isoform X1 | ||||
Refseq | XP_016482079.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like isoform X1 | ||||
Refseq | XP_016482080.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like isoform X1 | ||||
Refseq | XP_016482081.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like isoform X1 | ||||
Swissprot | Q8VWK4 | 2e-99 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A1S4AZT5 | 0.0 | A0A1S4AZT5_TOBAC; telomere repeat-binding factor 1-like isoform X1 | ||||
STRING | XP_009606064.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2864 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 3e-89 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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