PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016481478.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 626aa    MW: 71943.9 Da    PI: 9.0736
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016481478.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.51e-131289290
            FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                    fY+e+A+  GFsv k++s+k+ r +++   t++C +   r+ + ++          +  +Cka+l   ++++g w+v+k++++HnH++ 
  XP_016481478.1 12 FYKEHARLRGFSVIKRNSNKK-RGDTVGYITYCCDRTRIRKIKFTT----------KSNNCKARLAAILDDSGCWRVSKVVHDHNHDFL 89
                    9***************99998.555699*********999997666..........7789**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-101289IPR004330FAR1 DNA binding domain
PfamPF105516.9E-29172262IPR018289MULE transposase domain
PROSITE profilePS509669.965380416IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-4391418IPR006564Zinc finger, PMZ-type
PfamPF044341.8E-4392416IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MRFRDKDTLF AFYKEHARLR GFSVIKRNSN KKRGDTVGYI TYCCDRTRIR KIKFTTKSNN  60
CKARLAAILD DSGCWRVSKV VHDHNHDFLP SVSRLMAGHR PVCDSLKRDL VAHDRSGIRP  120
SKNIRFAKVQ RGGPQNLGCT PKDCRNYILK SRNFEMQEGD AQSLLTFFMK SSFDTTYLVN  180
RYNMPYASFV GINHHRQSIL LGYALMSHED FDSYKLVFRT CLDAMGNVHP DAIITNQCQS  240
IKVAIAEVMP NTIHRYCIWH IFSKLPVYLS GVRPSKIADV EFKSMVLDSI TVEVFERKCI  300
EYIARSNGFQ IVCESMFKWE QQAIQCYTRT MHEFFKTQLR KLYHCEVSSP DDHQVVPDIE  360
KFIVSDYSVI TKNDGNPVEY TVEYIPIGEY FSCSCKWFES RGILCCHILK ILSHKKIDKI  420
DERYILTRWR SDVIKPHLNR IHQVGYPTMT HEYKTYRSML KYFDMACDIT LGTSVKIQYV  480
KHNLKKMVHD LQNWDTEMIV PNQDQDDSDE TEGITLRDPQ YTNSRGRPRL NQYRGRIEYY  540
FTSSQPRGVF GASNGARIGV RGGGGGGGRV GVYHGGRGGG HRGRGNGQGR GTNVDYDGSL  600
GVNEQIDATQ SQSSLFDLNA EPDMEI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1560568RGGGGGGGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754465e-34HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016481478.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
TrEMBLA0A1S4AYA60.0A0A1S4AYA6_TOBAC; protein FAR1-RELATED SEQUENCE 2-like
STRINGXP_009587945.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-34FAR1-related sequence 5