PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016481298.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 339aa    MW: 37937 Da    PI: 9.4826
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016481298.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.58.3e-1936129186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekk....rtsessstcpyfdqle 86 
                     +W+++e+ aLi+a+r+++ +l+rg+l++++W+ev++ +  r  g+   ++++qC++k+e+l+kry+ + +++      r+ +  s +++f++++
  XP_016481298.1  36 CWSHDETIALIDAYRDKWYSLSRGNLRANHWQEVADDVaaRCPGVdpPKTAVQCRHKMEKLRKRYRTEIQRAAPyggvRSHRYCSAWVLFKRMD 129
                     8************************************976555665589*****************9988876411113455556777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-2035131No hitNo description
PROSITE profilePS500906.1443797IPR017877Myb-like domain
SMARTSM005955.1E-1044136IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MATLSSSTQH FSNSQSELPS ANVTVAVSSR RLPPPCWSHD ETIALIDAYR DKWYSLSRGN  60
LRANHWQEVA DDVAARCPGV DPPKTAVQCR HKMEKLRKRY RTEIQRAAPY GGVRSHRYCS  120
AWVLFKRMDA MERGPNAVSS DEEADEDVED YRQNSVKLIG DLYGNNNVNT SNNRSSSSFQ  180
GVVSNGGGGF RIRIPGMPGA APPMAKPYSR MEDSGVENPS NFGPNNFGPG KTFRGDGFVK  240
KADMGKRVAG EGVGPVREKK KEDPMGEMVA AIKVLGDGFV RMERMKMDMA RELEEMRMEM  300
EMKRTQMILE SQQRIVEAFA QALSEKNHKK PKRMPAHEC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016481298.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A1S4AXS00.0A0A1S4AXS0_TOBAC; trihelix transcription factor ASIL2-like
STRINGXP_009592908.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80282327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.17e-50Trihelix family protein