PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016475702.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GeBP | ||||||||
Protein Properties | Length: 238aa MW: 27425.5 Da PI: 10.2868 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 30.4 | 1e-09 | 93 | 137 | 48 | 97 |
DUF573 48 kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +++++q+ +K+++LK+K++k + + ++++hdqki+e++++iWg XP_016475702.1 93 NFTEKQIAKKLKKLKEKYHKLARS-----KSLIKTPHDQKIYEIARQIWG 137 6899***************99988.....6789****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 8.8E-10 | 64 | 137 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MCDFQTVHTY KSQLCPKFQL SPNTSSKTMT TPPRPKRNPT SAANHRKNSP KSPEKTISKT 60 PETHRVFTEN DEIQLLKTLS GSPNTSEFTS NGNFTEKQIA KKLKKLKEKY HKLARSKSLI 120 KTPHDQKIYE IARQIWGRNV AKGKEKEPVV ELHRSCEEEV NLEEFPFLVS EMMSVFGRSG 180 YCKEGLRRLG KEKLKKMNEK WMELRLKEAE IMVNKAKLYH EQLKSVVEGS KGTDNEAN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016475702.1 | 1e-177 | PREDICTED: uncharacterized protein LOC107797339 | ||||
TrEMBL | A0A1S4AG93 | 1e-175 | A0A1S4AG93_TOBAC; uncharacterized protein LOC107797339 | ||||
STRING | XP_009757927.1 | 1e-175 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13634 | 7 | 8 |